RNA id: XM_021622871.2


Basic Information

Item Value
RNA id XM_021622871.2
length 1689
RNA type mRNA
GC content 0.53
exon number 10
gene id LOC110537102
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 17721177 ~ 17729244 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGAGAAATAGAGAAAAAGACTCCTGAAAGAGGATTCTATAGCAGGGAGGTATACCGGCAGTGAAACAGttgACCTGATTCTGACCTCTGAACTGTCCAAGATGGCGACCTCCTTCACAAGAATGATGTCCGGCCGTAACACGGCCGTGCTGTTGGCCAGCCTGGGAGTAGGCACCATGGCAACCGGCTACCTGATGACCGACAGCAACATCCTGTccgctgaggagaggaggaagctCTATCCACCCAGCGCTGACTATCCTGACCTGAGGAGGCACAATAACTGCATGGCGCACTCCCTGACCCCTGCTATCTACGGTAAGCTGAGAGACAAGGTGACCCCTAACAACTGGAGCCTGGACCAGTGCATCCAGACCGGAGTGGACAACCCTGGCCACCCGTTCATTAAGACTGTTGGCATGGTGGCTGGGGACGAGGAGAGCTacgagGTGTTTGCTGATATATTTGACCCCGTCATCAAAGACCGACACAATGGCTACGACCCCAAAACAATGAAACACCCCACTGATCTGGACGCGtccaagATCACCAACGGTATGTTTGATGAGAAATACGTTCTGTCGTCTCGCGTGCGTACAGGCCGTAGTATCCGTGGTCTGAGCCTGCCCCCGTGCTGCTCCCGCTCGGAGCGCCGTGAGGTAGAGCGTGTGACCGTTCAGGCCCTGGCCGGCCTGAAGGGTGATCTGGCCGGACGTTACTACAGCCTGGGAGACATGACGGagaaggagcagcagcagcttatTGATGAGCATTTCCTGTTCGACAAGCCCGTCTCTCCTCTGCTGACCTCTGCCTTCATGGCCCGTGACTGGCCTGATGCCAGGGGCATCTGGCACAACAATGAGAAGACCTTCTTGATCTGGGTCAATGAGGAGGACCACACCAGGGTCATCTCCATGGAGAAGGGAGGAAACATGAAGAGAGTGTTCGAGAGGTTCTGCAGAGGACTCCAACAGGTGGAGAAGCTGATCCAGGAGAGAGGCTGGGAGTTCATGTGGAACGAGCGCCTGGGATACATCCTGACCTGTCCCTCTAACCTGGGTACTGGACTCAGGGCTGGAGTGCACATCAGACTGCCCAACCTCAGCAAGGACCCTCGCTTTGGTAAGATCCTGGACAACATGCGTCTGCAGAAGAGAGGGACAGGCGGAGTTGACTCAGCCACAACTGGAGACACCTTTGATATCTCCAACAACGACCGTCTGGGAAAATCTGAGGTGGAGCTGGTCCAGTTGCTGGTTGATGGAGTCAACTATCTGATTGACTGTGAGAAGAAGCTGGAAAGGGGGCAGGACATCAAGGTCCCCTCCCCCATCGCCCAGTTCAGAAAGTGAAACACCTGAGCCCCACATCTGAGAGGAAGTGACCCGCTCTGCGGTTAGAGAGGGCCAAAGAAGAGGAGCATGATCCCTCCTCATCCCCAAACTGAGCAATTTGGAGTAAAGTAGAAGTAGAATGTCTTTCCACTGGTCCAGGGACAAGTGTTGGTGTATCCCCCTTGATGGTTAAGGCTGGGGTTGGGGGTATcataatctgatcctagatctgtggttagggacAGCTTCTACCAGGAGCGAAAGTCTTACCTGTAACACTAACCTCAATAAAAATCAACCCTAATAAAACCACTGATCTCTGATCAATAAAATAACTAATTGTCTGATTCCAA

Function

GO:

id name namespace
GO:0016310 phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0016301 kinase activity molecular_function

KEGG:

id description
K00933 E2.7.3.2; creatine kinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1190347 lncRNA downstream 14636 17706263 ~ 17706541 (-) True G1044488
TU1190345 lncRNA downstream 17599 17703165 ~ 17703578 (-) True G1044486
TU1189744 lncRNA downstream 40293 17680677 ~ 17680884 (-) True G1043996
TU1189734 lncRNA downstream 49236 17671644 ~ 17671941 (-) True G1043986
TU1189695 lncRNA downstream 68493 17652288 ~ 17652684 (-) True G1043950
TU1190372 lncRNA upstream 259 17729503 ~ 17731165 (-) False G1044513
TU1190373 lncRNA upstream 1659 17730903 ~ 17731640 (-) False G1044513
TU1190374 lncRNA upstream 1659 17730903 ~ 17732067 (-) True G1044513
TU1190377 lncRNA upstream 6642 17735886 ~ 17736114 (-) True G1044516
TU1190378 lncRNA upstream 7129 17736373 ~ 17736643 (-) True G1044517
XM_021622869.2 mRNA downstream 10940 17681785 ~ 17710237 (-) True LOC110537100
XM_036937085.1 mRNA downstream 144640 17557135 ~ 17576537 (-) False LOC110537096
XM_036937086.1 mRNA downstream 144640 17557135 ~ 17576537 (-) True LOC110537096
XM_036937081.1 mRNA downstream 196790 17502204 ~ 17524387 (-) False LOC110537091
XM_036937092.1 mRNA upstream 24719 17753963 ~ 17808512 (-) False LOC110536806
XM_036937093.1 mRNA upstream 24719 17753963 ~ 17808512 (-) False LOC110536806
XM_036937094.1 mRNA upstream 26692 17755936 ~ 17808512 (-) True LOC110536806
XM_021622888.2 mRNA upstream 130856 17860100 ~ 17863387 (-) True LOC110537108
XM_036937101.1 mRNA upstream 162650 17891894 ~ 17912969 (-) False LOC110537109
TU1190341 other downstream 24072 17696129 ~ 17697105 (-) True G1044482
TU1189216 other downstream 653292 17065321 ~ 17067885 (-) False LOC110537077
TU1189218 other downstream 654049 17065321 ~ 17067128 (-) True LOC110537077
TU1188573 other downstream 1176451 16533617 ~ 16544726 (-) True LOC110537061
TU1188176 other downstream 1393063 16324963 ~ 16328114 (-) False LOC110537059
TU1190533 other upstream 288860 18018104 ~ 18018758 (-) True G1044649
TU1190557 other upstream 326867 18056111 ~ 18058392 (-) True G1044671
TU1190582 other upstream 368319 18097563 ~ 18099722 (-) False G1044692
TU1190580 other upstream 368408 18097652 ~ 18099722 (-) True G1044692
TU1190652 other upstream 462990 18192234 ~ 18193223 (-) True G1044761

Expression Profile