RNA id: XM_036938892.1



Basic Information


Item Value
RNA id XM_036938892.1
length 696
RNA type mRNA
GC content 0.67
exon number 2
gene id LOC118937764
representative True

Chromosome Information


Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 17961976 ~ 17964065 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ATGCATAGAGTGTTTGCCTTCCACACCATCAACCCGGGTAGTAATGCGGCCGATGTAGGTATAGTCCTAGGCCCTGTTGCAGCCCACGGCCCAGACCGCCAGGCTATTCCTGACTGCAGACGGACTAATGATGCCAAGAGCAGGCCAGGGGAGCCAGAGGAGCCAGGAGAGCCAGGGGAGCCAGAGGAGCCAGGAGAGCCAGAGGAGCCAGGGGGGGCAGAGGAGCCAGGGGAACCAGGGGAGCCAGGAGAGCCAGAGGAGCCAGGGGGACCAGGGGAGCCAGGAGAGCCAGGAGAGCCAGGGGATCCAGAGGAGTCAGGAGAGCCAGGGGAGCCAGAGGAGCCAGGGGGGCCAGAGGAGCCAGCAGGAGAGCCAGGGGAGCCAGGGGCACCAAGGGAGCCAGGAAAGCCAGGGGGACCAGGGAAGCCAGAGGAGCCAGGGGGACCAGGGGAGCCAGAGGAGCCAGGGGAGCCAGGAGAGCCAGGAGAGCCAGGGGGACCAGAGGAGCCAGAGGAGCCAGAGGAGCCAGGAGAGCCAGGGGAGCCAGAGGAGCCAGGGGAGCCAGAGGAGCTAGGGGAGCCAGAGGAGCTAGGGGAGCCAGGGGGACCAGGGGAGCCAGGGGAACCAGAGGAGCCAGGGCAGCCAGAGGTGCCAGGGGAACCAGGGGATCCATCCTGCTCTGGTGACACAATATAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1190475 lncRNA downstream 14442 17947284 ~ 17947534 (-) True G1044604
TU1190466 lncRNA downstream 31886 17929855 ~ 17930090 (-) True G1044596
TU1190462 lncRNA downstream 35646 17925820 ~ 17926330 (-) True G1044592
TU1190429 lncRNA downstream 132656 17828858 ~ 17829320 (-) True G1044559
TU1190428 lncRNA downstream 133231 17828467 ~ 17828745 (-) True G1044558
TU1190499 lncRNA upstream 6525 17970590 ~ 17970854 (-) True G1044619
TU1190500 lncRNA upstream 7913 17971978 ~ 17972434 (-) True G1044620
TU1190502 lncRNA upstream 8552 17972617 ~ 18012465 (-) False G1044621
TU1190503 lncRNA upstream 8552 17972617 ~ 18012465 (-) False G1044621
TU1190504 lncRNA upstream 8552 17972617 ~ 18007116 (-) True G1044621
NM_001124267.1 mRNA downstream 21269 17935728 ~ 17940707 (-) True LOC100135895
XM_036937101.1 mRNA downstream 49007 17891894 ~ 17912969 (-) False LOC110537109
XM_036937102.1 mRNA downstream 49007 17891894 ~ 17912969 (-) False LOC110537109
XM_036937104.1 mRNA downstream 49007 17891894 ~ 17912969 (-) True LOC110537109
XM_021622888.2 mRNA downstream 98589 17860100 ~ 17863387 (-) True LOC110537108
XM_021622897.2 mRNA upstream 105585 18069650 ~ 18078764 (-) False LOC110537114
XM_036937106.1 mRNA upstream 105585 18069650 ~ 18078764 (-) False LOC110537114
XM_036937108.1 mRNA upstream 105585 18069650 ~ 18079512 (-) True LOC110537114
LOC110537117 mRNA upstream 135968 18100033 ~ 18100881 (-) True LOC110537117
XM_021622903.2 mRNA upstream 325905 18289970 ~ 18297738 (-) False LOC110537118
TU1190341 other downstream 264871 17696129 ~ 17697105 (-) True G1044482
TU1189216 other downstream 894091 17065321 ~ 17067885 (-) False LOC110537077
TU1189218 other downstream 894848 17065321 ~ 17067128 (-) True LOC110537077
TU1188573 other downstream 1417250 16533617 ~ 16544726 (-) True LOC110537061
TU1188178 other downstream 1633862 16324963 ~ 16328114 (-) True LOC110537059
TU1190533 other upstream 54039 18018104 ~ 18018758 (-) True G1044649
TU1190557 other upstream 92046 18056111 ~ 18058392 (-) True G1044671
TU1190582 other upstream 133498 18097563 ~ 18099722 (-) False G1044692
TU1190580 other upstream 133587 18097652 ~ 18099722 (-) True G1044692
TU1190652 other upstream 228169 18192234 ~ 18193223 (-) True G1044761

Expression Profile