RNA id: LOC110537117


Basic Information

Item Value
RNA id LOC110537117
length 849
RNA type mRNA
GC content 0.46
exon number 1
gene id LOC110537117
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 18100033 ~ 18100881 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCAAGGGGACTCAACATTAAAATTGACTGAAGATGCTGTGCTCCCGAGTATTCCAGTCTTCCCTCAGCCCATTGATGGACTTCTACTGGCCTGTGCGCAGTCTTTGGCCAGAGGTCCAACCTCTTCTCTGCCAGCGGTATTTACAGCAGAGAAACATGCTGGAGATCAAGAGCAGTCTGGAGCTAATGGAGAAACATCAGCAGCACATCTTTGGAGAGATGGACCATGTCCCAGCCTCTGTGGTCAACCAGTCTCTTACACGctggagaacgagagagaaggtTTTGCCCTGGCACTGGAGACTAAAGACTACTCCCCAGAGGAGCTGTCTGTCAAGCAGATGGGCAGGAAGCTGAGAGTCAGTGGGAAGACAGAGAAGAAGCCGGATGATGGGGAAGGCTCTTACTCTTCCAGATGCCAGGAGTTCAGACAGGAATTTGATCTGCCTGATGGGGTGAATCCTGAGACTGTCACCTGCTCCCTGGATCATGATGGGAAGCTCCACATCGAGGCTCGAAAGAATCCATAATCTGCTGAGGAGGTGGCTGAGAGAGTGGTGCCCATCAACTGTAGCCTGGATGTGAAGATGCCACAATTCCTCAGCTCACAGACAGAGGGCAGCAACATAGAGGGCAGCACCTCAGACACATAGGAGAAACAACAGAACACTATTTCACATAAAGACTGATCATAATATTATGCTATTTTTTATTTGACTGGATGTTACATTTTCTAATCTATATTTGTAGGGTTATGAAACTGTATGCATTTACATTTCATATCTTGTAACAATCAATCTGAGATGCTATTTAATTGAATCAATCAAATCTATACATAATATTGCAGTCA

Function

GO:

id name namespace
GO:0006950 response to stress biological_process
GO:0005212 structural constituent of eye lens molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1190565 lncRNA downstream 27226 18072097 ~ 18072807 (-) True G1044678
TU1190550 lncRNA downstream 47178 18048606 ~ 18052855 (-) True G1044666
TU1190532 lncRNA downstream 77728 18021572 ~ 18022305 (-) True G1044648
TU1190531 lncRNA downstream 82616 18017196 ~ 18017417 (-) True G1044647
TU1190503 lncRNA downstream 87568 17972617 ~ 18012465 (-) False G1044621
TU1190604 lncRNA upstream 30314 18131195 ~ 18132786 (-) True G1044714
TU1190624 lncRNA upstream 57264 18158145 ~ 18158358 (-) True G1044734
TU1190637 lncRNA upstream 76932 18177813 ~ 18178053 (-) True G1044747
TU1190638 lncRNA upstream 78223 18179104 ~ 18179386 (-) True G1044748
TU1190640 lncRNA upstream 79223 18180104 ~ 18180377 (-) True G1044750
XM_036937108.1 mRNA downstream 20521 18069650 ~ 18079512 (-) True LOC110537114
XM_021622897.2 mRNA downstream 21269 18069650 ~ 18078764 (-) False LOC110537114
XM_036937106.1 mRNA downstream 21269 18069650 ~ 18078764 (-) False LOC110537114
XM_036938892.1 mRNA downstream 135968 17961976 ~ 17964065 (-) True LOC118937764
NM_001124267.1 mRNA downstream 159326 17935728 ~ 17940707 (-) True LOC100135895
XM_021622903.2 mRNA upstream 189089 18289970 ~ 18297738 (-) False LOC110537118
XM_021622904.2 mRNA upstream 235970 18336851 ~ 18387111 (-) False LOC110537119
XM_036937111.1 mRNA upstream 235970 18336851 ~ 18387113 (-) True LOC110537119
XM_021622906.2 mRNA upstream 338878 18439759 ~ 18458056 (-) False LOC110537121
XM_021622907.2 mRNA upstream 339124 18440005 ~ 18458056 (-) False LOC110537121
TU1190582 other downstream 311 18097563 ~ 18099722 (-) False G1044692
TU1190580 other downstream 311 18097652 ~ 18099722 (-) True G1044692
TU1190557 other downstream 41641 18056111 ~ 18058392 (-) True G1044671
TU1190533 other downstream 81275 18018104 ~ 18018758 (-) True G1044649
TU1190341 other downstream 402928 17696129 ~ 17697105 (-) True G1044482
TU1190652 other upstream 91353 18192234 ~ 18193223 (-) True G1044761
TU1190787 other upstream 345800 18446681 ~ 18447251 (-) True LOC110537121
TU1191128 other upstream 713021 18813902 ~ 18815394 (-) True G1045201
TU1191233 other upstream 758981 18859862 ~ 18905106 (-) False LOC110537130
TU1191234 other upstream 758981 18859862 ~ 18868059 (-) True LOC110537130

Expression Profile