RNA id: TU1190709


Basic Information

Item Value
RNA id TU1190709
length 1180
lncRNA type sense_over
GC content 0.42
exon number 2
gene id LOC110537118
representative False

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 18289970 ~ 18297738 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGGAGCAGGACTGCTGATGAATGACTGAATAAAAGAGTCACCCCTACGGAGGAGGAGAGGCCGCTGAGATGGAGAGACTAGCTTTCTGAGACAGTGCCAAATGAACGTCTGAACCCCTGCTACACTGCCCGGGCAACCCCTGGTGTTCCATGTAATAAGCTCGATCGGAAGAACAGATATGCTTTTGAGGGGAAAGGGGGTCTAgtcatttctgttttttttgttcagTGCCTTGTTCAGAGAAGGTATAGGATGTTTTTCCCAGCGCTTTTGGATGTGCTCAAGTGCCCCAGCGCCTTTTCTTTCCAAACAGACTGTGGCAGATAAACTGGCAAATCTCTAAACAGCAACAACAAACCATTTCAAGTCAGCACTGCAATACAGACAATGTAATCCGATCCGTTCCTCTCCCCCAAGTAGAGCAATAATgcgtttctctctcttcccagttTCCACCAAAGTACTACATTGTGTTGTGTATTTATAATCATGTTTTTAGCTTCATATGTGTGTATTCGCTAATCGATAAAGACCGGATCATTGAGAAGTGCTGTTTGCCTTACCAATAATGAATTTTTTCTAATTCACCAGATAAGAATGTTGTTATTTTTCATTCCTGTATGGAGGCATATTGTTGTCTGTTACATAGGTACTATTTCTGTTCAGACCATGGATGCTGATTGGTCTAATGCTTGTTGGAGGAGGGAGTTAGTTGGGAACAGACCTATGGCTTGTTTCTTTGTCTTATCACTGTTACTCCACCAATGTCTAGTAGATCCAGACTACTTTCTAAACTTGCCAAATGCACAATAACCAACAGGGACAATTTCCCGGCTACGCACAAACACCGGAATGTCTGACATCactgggaaaaaatatatatgagaTGGTAGAAAACTGCTAGTGTGTGCTGCCACTGGACTGATTCATGTGAAATGGTTAGTTTTTCTTCTCATTTCATTCTCTGAGTGAAAATATTGCCTGGAAGTGCTGGCCCAGGCGACGATCAGAGCCAGGAGCAAAGGCTTTTGGGAAAACAGGATTTTACTCCCCTCCTCTTTTTGAAGAATGCTGGCACCTTTTATAGAGCACTTTTTAGTGATGCAATACCGTATTATAACTTTGAATtaatttgcacattattattactATGATACCAGGTGGTAACTGATGACACCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1190706 lncRNA downstream 19244 18258031 ~ 18271149 (-) False G1044805
TU1190703 lncRNA downstream 19244 18263745 ~ 18271149 (-) True G1044805
TU1190700 lncRNA downstream 25110 18258031 ~ 18265283 (-) False G1044805
TU1190699 lncRNA downstream 32506 18255202 ~ 18257887 (-) True G1044804
TU1190671 lncRNA downstream 79187 18210869 ~ 18211206 (-) True G1044780
TU1190711 lncRNA upstream 5525 18297117 ~ 18297534 (-) True LOC110537118
TU1190714 lncRNA upstream 8538 18300130 ~ 18300382 (-) True G1044812
TU1190720 lncRNA upstream 20993 18312585 ~ 18346515 (-) True G1044817
TU1190752 lncRNA upstream 103478 18395070 ~ 18395373 (-) True G1044848
TU1190765 lncRNA upstream 124694 18416286 ~ 18416524 (-) True G1044861
LOC110537117 mRNA downstream 189512 18100033 ~ 18100881 (-) True LOC110537117
XM_036937108.1 mRNA downstream 210881 18069650 ~ 18079512 (-) True LOC110537114
XM_021622897.2 mRNA downstream 211629 18069650 ~ 18078764 (-) False LOC110537114
XM_036937106.1 mRNA downstream 211629 18069650 ~ 18078764 (-) False LOC110537114
XM_036938892.1 mRNA downstream 326328 17961976 ~ 17964065 (-) True LOC118937764
XM_021622904.2 mRNA upstream 45259 18336851 ~ 18387111 (-) False LOC110537119
XM_036937111.1 mRNA upstream 45259 18336851 ~ 18387113 (-) True LOC110537119
XM_021622906.2 mRNA upstream 148167 18439759 ~ 18458056 (-) False LOC110537121
XM_021622907.2 mRNA upstream 148413 18440005 ~ 18458056 (-) False LOC110537121
NM_001124486.1 mRNA upstream 167155 18458747 ~ 18462494 (-) False LOC100136215
TU1190652 other downstream 97170 18192234 ~ 18193223 (-) True G1044761
TU1190582 other downstream 190671 18097563 ~ 18099722 (-) False G1044692
TU1190580 other downstream 190671 18097652 ~ 18099722 (-) True G1044692
TU1190557 other downstream 232001 18056111 ~ 18058392 (-) True G1044671
TU1190533 other downstream 271635 18018104 ~ 18018758 (-) True G1044649
TU1190787 other upstream 155089 18446681 ~ 18447251 (-) True LOC110537121
TU1191128 other upstream 522310 18813902 ~ 18815394 (-) True G1045201
TU1191233 other upstream 568270 18859862 ~ 18905106 (-) False LOC110537130
TU1191234 other upstream 568270 18859862 ~ 18868059 (-) True LOC110537130
TU1192375 other upstream 1264686 19556278 ~ 19558669 (-) True LOC110537144

Expression Profile