RNA id: XM_021622904.2


Basic Information

Item Value
RNA id XM_021622904.2
length 2037
RNA type mRNA
GC content 0.47
exon number 11
gene id LOC110537119
representative False

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 18336851 ~ 18387113 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACTGCGCTTGATGAAGTGGTGGGGGTGGGACTAACTGAAGTCCATCCAGGAAGCGTTTTGCTGAATACTTTCAGTTGCCATCGAGATATCGCGATGAGATAGCAGTAATGTGATAGTTCTGTGTAATACAATATGCCAGTTTTTAGAAAAAACTAAACACATTTCGTAACGTTAATAATGAGTTTTTTTTCCGGAGTTTGTTTTCATGGCATAGTTAGACAAATAGCCATGTGTATCGTCAACCTTGTTGCAGAATTGATCAATAGTATATGCAGAATAGATGCAGAATAAGTGTTGTTTTGGACCATCTGTTGTCTAATCCAACAACTGTGTGGTTTAATTTACCACTGAACTAACCCCAGCAGTAAACTCATTTTAAATAATGTCGAAACTAGTGGGCACTGCGGGGGTCTCTGTGTTGGGCGACAAATCTTTGGAGTTTTACCGAGATCCAGTGGCTTTTTGTGAACAACGTATTGAAAAGCATGGGTCACGGATATTTCAATCAAGACTTCTGAACAAACCAACTTCCTTCGTCTGTTCGGTGGAAGGGATGAAGGAATTACTTTGCGAGAAGTCTTCTGTGTTCCTGAAAGACCCCACTGATGTAATGCACAACATGTATGGAGACAACATAGTGACTGCTAATGGCGAGGAAGCCTGCTTGCTGCGTCTGTCTCTCACCAACCTTTTCACAGGAAAGTGTCTGGCCTCAGGCTCTGACCTCATTAACAGTGTTTCTGAACGGTGCTTGAAGAACCTTTCTGCAACTGGGGAGCCCGTGTCGGTGTACCCTCTGTTTAAACGACTGGGAACAGAACTGGTGTTGGGGCTGTTCCTGAATGTGAACCCAGATGAGACACCAGAGCTTTTCCAGGAAATTACAGCACTCTGTACCCTACACTGGCATGGGATCATCTCAACTCCAATCAGTGTGAAGGTTCCTCTGTGGTCCTCTGGCTTTTGCACAGCGCTGGAGGCTAAAGACAAGCTCATGGACATCATTAAAGACAAGCTGGAGTGTCAGAGACAGGGGTTTGTAGGTTATCTCCGTGATCTACCTCTCCCTGATGCCAGTTGTGCCTCCCAGCATCTGCTGTTGTTCATCTCTGCTCTGATCCCCAAAGCCCTGGCATCCTTACTCACCTCCTTCACCCTGGTTCTGAGTGGCGCAGGCAAGaAGGAAATTAGGAATCGTGCGAGGGCAGACCCTGATTACCTTTACTACGTCCTCCTGGAAGTACAGAGACTTTGGCCTCCGTTCATTGGTGGAAGGAGAATAGCCAATCAAGACACTACTCTGGGAGGCTTCCACATTCCCAAGGCTTACGCTGCCATGTACATCAGCCACGCCATCCACCGTGACCCGGAAGTGTTCCACCAGCCAGAGGACTTCCTGCCAGAGAGGTGGTGTGGAAGAAACGCAGGACAGGAGCACCTCCTCTGCAGCCTAGGCAACGGCCCCAGGAACTGCATCGGAGTCCAGCTGAACAACGTCTTTCTCAAGGTAGCGTGTGGGTACCTGCTCCAGCACTATGATTGGGACCTGAGTCCCTACTCACAGGACCTCCAGTACAAATGGTTGCCTGTGTCCCGGCCCACTGTCCCTCCAATGGTGAGCTTCACTGAGCTGGAGCTGGAGAGCAGTGCCACAGACCTGCCTGATGGTCCACCCTAAAGACCAAAGCATGGACACTGAGAGGCAGGTGGATAGGACGAAGAGAGGCCCCACTGTAGCAGTGGTCCTAATGGTCTCTCAAGGACACCAGTATGTGCAGATCTTAGTTATTACCCTTCCCTCGATCTTCCTGTACTGATTTAAAGATAATGTTGATATGGATCACTGTTCACATACTGTTCACATACAATACTGTATATTGTCCAGAACGGGACTGAAAACAGTGACAGtgtcatacagttgaagtcggaagtttacatacacctagtcaaatacatttaaactcagtttttcacaattcctgacatttaatctgagtaaaaattcccgtcaccactttattttaagaatgtgaaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1190714 lncRNA downstream 36469 18300130 ~ 18300382 (-) True G1044812
TU1190711 lncRNA downstream 39317 18297117 ~ 18297534 (-) True LOC110537118
TU1190710 lncRNA downstream 45259 18289996 ~ 18291592 (-) False LOC110537118
TU1190709 lncRNA downstream 45259 18290393 ~ 18291592 (-) False LOC110537118
TU1190706 lncRNA downstream 65702 18258031 ~ 18271149 (-) False G1044805
TU1190752 lncRNA upstream 7959 18395070 ~ 18395373 (-) True G1044848
TU1190765 lncRNA upstream 29175 18416286 ~ 18416524 (-) True G1044861
TU1190772 lncRNA upstream 35722 18422833 ~ 18452696 (-) True G1044867
TU1190809 lncRNA upstream 126100 18513211 ~ 18517175 (-) False LOC110537126
TU1190808 lncRNA upstream 126279 18513390 ~ 18517224 (-) False LOC110537126
XM_021622903.2 mRNA downstream 39113 18289970 ~ 18297738 (-) False LOC110537118
LOC110537117 mRNA downstream 235970 18100033 ~ 18100881 (-) True LOC110537117
XM_036937108.1 mRNA downstream 257339 18069650 ~ 18079512 (-) True LOC110537114
XM_021622897.2 mRNA downstream 258087 18069650 ~ 18078764 (-) False LOC110537114
XM_036937106.1 mRNA downstream 258087 18069650 ~ 18078764 (-) False LOC110537114
XM_021622906.2 mRNA upstream 52648 18439759 ~ 18458056 (-) False LOC110537121
XM_021622907.2 mRNA upstream 52894 18440005 ~ 18458056 (-) False LOC110537121
NM_001124486.1 mRNA upstream 71636 18458747 ~ 18462494 (-) False LOC100136215
XM_036936681.1 mRNA upstream 71636 18458747 ~ 18464454 (-) False LOC100136215
XM_021622411.2 mRNA upstream 71636 18458747 ~ 18464455 (-) False LOC100136215
TU1190652 other downstream 143628 18192234 ~ 18193223 (-) True G1044761
TU1190582 other downstream 237129 18097563 ~ 18099722 (-) False G1044692
TU1190580 other downstream 237129 18097652 ~ 18099722 (-) True G1044692
TU1190557 other downstream 278459 18056111 ~ 18058392 (-) True G1044671
TU1190533 other downstream 318093 18018104 ~ 18018758 (-) True G1044649
TU1190787 other upstream 59570 18446681 ~ 18447251 (-) True LOC110537121
TU1191128 other upstream 426791 18813902 ~ 18815394 (-) True G1045201
TU1191233 other upstream 472751 18859862 ~ 18905106 (-) False LOC110537130
TU1191234 other upstream 472751 18859862 ~ 18868059 (-) True LOC110537130
TU1192375 other upstream 1169167 19556278 ~ 19558669 (-) True LOC110537144

Expression Profile