RNA id: XM_021622906.2


Basic Information

Item Value
RNA id XM_021622906.2
length 2543
RNA type mRNA
GC content 0.47
exon number 14
gene id LOC110537121
representative False

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 18439759 ~ 18458056 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGGAGTGTCATTAGTGAATAGCACCATTGCTTCGTCGCGGTTATAATGACAATTCAAACCAGCCAGCCACACGTCTTTTTAATTTAATGTAAAACATTTATATTCGTCAATAGCTACCTAGTTTTCAGAGCAGCTAACGTTATGTCAAGCCGGAGGAGTGAAGCCCTGGCTTTCTCTCTAGTGACGGGTATAAACCATGCCATGGCCAAGCTGGTGGACATCTGGGACAGCATGGGCATCATGGAGGAGCAGAGGGTAGAGCGGATGGAGACGGTGAAGAAACACATTGAGGGCCTTTTGAATGACATGATCACTGAGGAAGAAGCTTTGAAGCACCGCATCCGAACCAATATCATCACTTTTGAAAAACAGTTGGATACCTTGTGTCTGGAAATGTCAATGGATCCATACAAATTTGAGGAGGGCCTGACAGTCCTCCAGATCGAGAAGAATCTGCGTCTGCGTGTGGAGGTTCTGACCAAGGAGAAGGTGGACCGTTTGAAGGAGTTACACGGACTGCAGCAGCAGGATAAGGAACTGTGCTTGGAGCTGTGCGTCACTCCCTATTATGCTCCCACAGGCAGCATACCCTCACGCACTCAGTTGCAGGAGTTCCGGGAGCACCTCAAGACCCTCAGTGAAGAAAAGAAGAGTCGTGCAAAGGTGTTTTCAGGGCTGCGTGAGGACATCAGGAAGCTCATGGAGGACATGGGTCAGAAACCAGAAACCAGTCTGGAGAAAGAGTCGGTGTGTCATGGCGAGGAGATATTCCTGCTCACGCATGAAAACATCAAAGCCCTCCAACTGCTGTTGTCCCAGATGAAGGTCAAGAAGGAATCCCTGATGAATACTCTGGCTGAGCTGAAAGAACGAGCTATGTGCCTGTGGAATCGTCTGGAAGCGCTGGAGCAAGATCGCACTGCGTTCCAGGAGAGTGTGCAGGGTACCCTTTCTGACCAAATCACACAGTGGCAGGGGGAGGTTGATCGTCTGACAGTCCTGCAGAAAGCCATGTTGGAGGATGTGATTGACAAGGTCCGACAGGAACTAGTGGCTCTCTGGGACAAGTGCAACCAGGGCACTGAGCAGCGTGAACCCTTCAACGCCCACATCTGTGACGATGACTTCACAGAGGAATTGTTGGCACTGCATGATGCTGAGCTATTGAAGGTGAAGAATTACTATGACCTGGCTAAACCCTTACTGGAGGTTCTGCAGAAATGGGAGAAGTACTGGGCCCTCTTCCAGGACTTTGAGAAAAAGGCCAATGATCCAAACCGCTTCTCCAACAGAGGAGGAGCCCTTCTCAAAGATGCCAAAGAGAAGGTCAAAGTTCAGAAGATGTTGCCAAAGTTGGAGGAAGAGCTGAGGACTGGTGTTGAGAGCTGGGAGAAGGACCAGGGTACTGCCTTCCTGGTCCAGGGCCAGAGAGTCATGACCTACATCTCCACCCAATGGGAGGAGCACAAACAGCTGAGGGGCAAGGAGAAGAGTGAACGTGCCACTACATCAAAGAAGGGGGAAATGACAACTCTCTTCAAAACTCCCACGAAGAGGGCCCATGGCGGGATGAACACCCTCACCCCCAACAAGATCAGGAAGCAGACTCCTACACAGCCTATCATGGTGCGCTCCTACAGCTGCAACTCATCCAGCACATTCATCAGTGTGCCTAGCAGCaagcctcctctctcccagattcagatgcagAAAACCAAGTCCCTTGAGAGAAGCAGCGGTAGTCAGAGAACACCCCTGCAGGAGTACAACGGTACAGAGGAGAAAAAACCTGTTGACATCAGCTACTCTGACTTCACTGGTGACCTGTCCAAAAAGACAAATGATGCCATTTTCAATTcgacagcaaaggaccttttcTGATTTTCTCATGATGGTCCTCATGTTTTAAGATGTGCGTGTGGACAATTCACCCCGCACAGGTTGTGTTGTGTCCACTTGGCACTCCtctcgtgtgtgtatatatggccGGTGTTTGTAATGGTCAGTGAGCATTTCAGGTCTTTGTTATCTTGATGTAAATCATTTTTTGTAGTTGGTGTTGCTGTTACTTTGAAATGTGACCAGTTTAGCCTTTTTGTAATGCTTATTTTTGGACACCCTGTATGGAAGTGAATAGGTCTAAAGGGACTCTGTATGTGTCAGGTGTGGATGAAACATCATAAAGCCATGTTTTCCAGTTATTAATACTGTGCAGTCCAGGGAAGTGAATCACAAGTTTGATACGGTAGAGCCCCTTAGATGTTACATGCAGTACTTTTGATATTCCTTTTGATATTTGACTTGTTTATAAATGGCCAGGCTCCACCGGAGGAAGCATCCTGTTTTGATACAGACCTTCCAGCACAACAACATGCAGCTCTTTCTGTATGTAAATATTGCTCTCTTGAAAATATACTTTTCTTATTGCACATACGGTATTGACAATGTGTTTTGTCTTGACGTGTGCGTTGTCTTGTCAACATGTgcctgtttttattttatattttttgacttaattaataaatatatatatttcaatgaCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1190765 lncRNA downstream 23235 18416286 ~ 18416524 (-) True G1044861
TU1190752 lncRNA downstream 44386 18395070 ~ 18395373 (-) True G1044848
TU1190720 lncRNA downstream 93244 18312585 ~ 18346515 (-) True G1044817
TU1190714 lncRNA downstream 139377 18300130 ~ 18300382 (-) True G1044812
TU1190711 lncRNA downstream 142225 18297117 ~ 18297534 (-) True LOC110537118
TU1190809 lncRNA upstream 55155 18513211 ~ 18517175 (-) False LOC110537126
TU1190808 lncRNA upstream 55334 18513390 ~ 18517224 (-) False LOC110537126
TU1190814 lncRNA upstream 55334 18513390 ~ 18517175 (-) False LOC110537126
TU1190810 lncRNA upstream 55359 18513415 ~ 18517175 (-) False LOC110537126
TU1190811 lncRNA upstream 55359 18513415 ~ 18517224 (-) False LOC110537126
XM_036937111.1 mRNA downstream 52646 18336851 ~ 18387113 (-) True LOC110537119
XM_021622904.2 mRNA downstream 52648 18336851 ~ 18387111 (-) False LOC110537119
XM_021622903.2 mRNA downstream 142021 18289970 ~ 18297738 (-) False LOC110537118
LOC110537117 mRNA downstream 338878 18100033 ~ 18100881 (-) True LOC110537117
XM_036937108.1 mRNA downstream 360247 18069650 ~ 18079512 (-) True LOC110537114
NM_001124486.1 mRNA upstream 691 18458747 ~ 18462494 (-) False LOC100136215
XM_036936681.1 mRNA upstream 691 18458747 ~ 18464454 (-) False LOC100136215
XM_021622411.2 mRNA upstream 691 18458747 ~ 18464455 (-) False LOC100136215
XM_021622413.2 mRNA upstream 691 18458747 ~ 18471430 (-) True LOC100136215
XM_021622908.2 mRNA upstream 28283 18486339 ~ 18488673 (-) True rbp4l
TU1190652 other downstream 246536 18192234 ~ 18193223 (-) True G1044761
TU1190582 other downstream 340037 18097563 ~ 18099722 (-) False G1044692
TU1190580 other downstream 340037 18097652 ~ 18099722 (-) True G1044692
TU1190557 other downstream 381367 18056111 ~ 18058392 (-) True G1044671
TU1190533 other downstream 421001 18018104 ~ 18018758 (-) True G1044649
TU1191128 other upstream 355846 18813902 ~ 18815394 (-) True G1045201
TU1191233 other upstream 401806 18859862 ~ 18905106 (-) False LOC110537130
TU1191234 other upstream 401806 18859862 ~ 18868059 (-) True LOC110537130
TU1192375 other upstream 1098222 19556278 ~ 19558669 (-) True LOC110537144
TU1192719 other upstream 1455783 19913839 ~ 19938505 (-) True LOC110536814

Expression Profile