RNA id: XM_021622413.2


Basic Information

Item Value
RNA id XM_021622413.2
length 3442
RNA type mRNA
GC content 0.48
exon number 3
gene id LOC100136215
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 18458747 ~ 18471430 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCCATCATGCTTTGCTCCATCCGGTTGTACGGAATCAGGCCTGTGGGTGTGCGCACAGTGAAGATCTCAGAAGAGGAGGCATGGCTACTGTGTCCTCTCACAAGCCTTCACGTTCCTTATGTCAGGGAGCACGGCTAAGCGCCACACCAAGACCACCACCACAGCCTACCCCTTCCAGAGGCCATGGAGGAAGCCAAGGTCACAGAAGTTCCCCACCTGGAGCGGAGGGTCAGGAAGCGGAAAGAGCACATGGCCCTCCTGAAGACCAAGCTGAGCCGTAGCCTGTCCTGCTCCATGCCCAGGGTCAAGACAACCCTGACTGGATTATTCCCTGTGGTGCTCTGGCTGCCCAAGTACAAGCTGAAAGAGTATATCTGGGGTGATCTAATGTCGGGCCTCGTTATAGGCATCATCCTGGTCCCTCAGGCCATCGCCTACTGTCTGCTGGCCGGAGTAGACCCCATCTATGGCCTCTACACTTCCTTCTTCGCCAACATCATCTACTTCTTCATGGGGACCTCCAGGCACGTGTCTGTGGGCATATTCAGCCTGATGAGCCTTATGGTGGGCCAAGTGGTGGACAGAGAGGTGTATATGGCAGGGTTCGATTTGGATGACACCAAAGCAGATGGAATCTTGAATGTGACAGTTGACTCAGACAGCTCAGCCGTCAACCTGACCATGGGGGCCTTCGGCATGGAATGTGGGAAAGAATGTTATGCCATCAGTATCGCAGCAGCCATGACATTTTTGGTTGGGATTTACCAGGTATTGATGGCTGTGTTCAGACTGGGCTTTGTCTCCGTCTATCTCTCTGCCCCCATGCTGGACGGCTTCGCCACTGGCGCCTCGTTCACCATCCTCACCGTCCAAGCCAAGTACCTCCTGGGGCTCAAGATCCCTCGCCACCAGGGCTATGGAACAGTGGTGGTCACCTGGATCAACATCTTAAGCAACATCCAGAATACCAACTACTGTGACCTGATCACCAGTGCCATCTGCATCTCCGTCCTGGTGGCGGGGAAGGAGCTCCAAGAGCGCGTCAAGGACCGTCTTAAGATCCCCCTGCCCACAGAGCTGGTGGTGGTGGCGATCGCTACACTGGCGTCCCACTTTGGAGACTTTCATAGACGGTACGACTCCAATGTCTCTGGGGCTATCCCCACAGGCTTCATCCCCCCTAAGGTGCCCAGTTTTGGGTTGATGCCCAGGGTGGCCTTCGACGCCATCCCACTGGCTGTGATCAGCTTTGCCTTCACGGTTTCCCTCTCTGAGATGTTTGCCAAGAAGAACGGCTACACCGTTCGCCCCAACCAGGAGATGATGGCCATTGCTTTCTGTAACATCATCCCTTCTTTCTTCCACTGTTTTACCACCAGCGCTGCCCTGGCTAAGACTATGGTGAAAGACTCCACGGGCTGCCAGACTCAGGTCTCCAGCATTGTGAGTGCCTTCGTCGTTCTCCTGGTCCTACTCTTCTTTGCCCCTCTCTTTTACTCCCTCCAGAAGTGCGTCCTGGCCTGTATCATCATCGTCAGCCTGAGGGGTGCGCTCCGTAAATTCAGAGACGTGCCCAGCAAGTGGCGCATCAGTAAGATGGACGCTGTTGTCTGGATGGTGACGATGAGTGCCTCAGCTCTGATCAGTGTGGAGATGGGGCTGGTGGTTGGGGTAGTTTTCTCTATGCTCTGTATCATCGTCCAGACCCAGAAGCCCAAGGTTTCTCTGCTGGGACAGATCCATGACACTGCCCACTACGAGGATATGGAGGAGTATGAAAACCTCATGTCTCTCCCTAAAGTAAAGATCTTCCGTTTCCAGGCCCCGCTGTATTATGCAAACAATGACTTCTTCCTGAAGTCCCTGTACAAAGCCGTGGGCTTGGCACCTTTCCTGGAGATGACCAGGAGGAGGAAAGCAGAGAAAAAAGGGGAAACACTGGCAGCGAAGGAGGCTGGGAGAGCCGACAAGACTAATGGAGAGGTAAAGGTAGGGCTGGGTTCCAGAGAACTTGACTTACATACGATCATCCTAGACTGCTCTGCCATGCCCTTCATAGACTCAACAGGGATGCAAACCTTCAAAGGGATCCTTAAAGACTATAAGGAGGTGGGTGTCACGGTGCTGCTAGCGAGCTGCAACACCACGGTCATAGATTCTCTCAGTCAAGGCTCTTTCTTTGGGAAGGCTGACAAAGACATGGAAAACTTGTCATTTTACACTGTACATGCTGCAGTTCGATTTGCCAATGACAGGGCAGCTTCTACATCAGAGCTCTCCTACCCAGTTCCtcgagagctaccgtcctgtaggttttcgatccaaccctaatctagcacagtTGTtagttgataaactgaatcaagTTAGTTAAAACTGGGGTTGgagtaaaaacctacaggaggccAGCTCTctaggaacagagttggagaacCCCGATCTACATCCATTGGTGACGCACAGAAAGGTTGGTGGCACTttcattggggaggacaggctcgtggtaatgtctggagcggaatcagtggaatgcgaccaaatacatcaaacacatggtttccatgtatttgatgccattccatttgttgCGTTCCgggcattattatgagccgtcttccCCTCCGCAACCTCCACTAGACTAGAGCCATATATATTCAAATACATGGAAATGGAAATAAATGGCTCTGGTGTAGACTGAGACAGAAGAACAAGGTTTTTTTAATGTGAGGGAGAATGAGTAGTTGAAGAGTTAAATAGTGTATGTATGCAAGATTATGAAAGATAAAGTGAGCAAACAGCATCACTGGTAATTTTGCTCCTCACTTAGAGGCATGAATACATaatgttttacattttaataAATGAATATGCTGATTAAGAATCCTCAAATGGAATAATACCAAAAGGGAAGTGTTTGGAGGGAAATTTTACTTGACTCCTCAATCAATACATAACATACAGCTACAGTTAACAGTATTGAACTTTTCAACAACAAAATATTCCCTTAATGTTATACTTGAATTATAAGACAAGCAAGCTTTTGTACAGTGATGACCATGTGTCAGTGATACTGTTAATGCGCTGGATGTTTTATCAGGGATTTATGATTGACCATCCAATTAATAATCAAGGGAGTATCAATATATTTTatgttacattttgagtttggCCAGGACAGATTCAACGTAACATAGTCCATTTCGACTTCACAATTTATTTTCTAAAACACAACCTATGGTTACTAATCCAATATGTTACCTCAAGATGTACAATATTAGTTGACTTTTCAGATTAATTTTTGAAGTTTGGAATCTCATCAAATAATTAAATTCCCATTTAATATTTCTTAAAATCTGTACATTTGAGTTACCAAAAGAAACAATAATTTTGTATATTTATACAGTATCTGGAAATCCATGGTTTAATAAACTATTACAataca

Function

GO:

id name namespace
GO:1902358 sulfate transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0008271 secondary active sulfate transmembrane transporter activity molecular_function

KEGG:

id description
K14700 SLC26A1, SAT1; solute carrier family 26 (sulfate anion transporter), member 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1190772 lncRNA downstream 6051 18422833 ~ 18452696 (-) True G1044867
TU1190765 lncRNA downstream 42223 18416286 ~ 18416524 (-) True G1044861
TU1190752 lncRNA downstream 63374 18395070 ~ 18395373 (-) True G1044848
TU1190720 lncRNA downstream 112232 18312585 ~ 18346515 (-) True G1044817
TU1190714 lncRNA downstream 158365 18300130 ~ 18300382 (-) True G1044812
TU1190809 lncRNA upstream 41781 18513211 ~ 18517175 (-) False LOC110537126
TU1190808 lncRNA upstream 41960 18513390 ~ 18517224 (-) False LOC110537126
TU1190814 lncRNA upstream 41960 18513390 ~ 18517175 (-) False LOC110537126
TU1190810 lncRNA upstream 41985 18513415 ~ 18517175 (-) False LOC110537126
TU1190811 lncRNA upstream 41985 18513415 ~ 18517224 (-) False LOC110537126
XM_021622906.2 mRNA downstream 691 18439759 ~ 18458056 (-) False LOC110537121
XM_021622907.2 mRNA downstream 691 18440005 ~ 18458056 (-) False LOC110537121
XM_036937111.1 mRNA downstream 71634 18336851 ~ 18387113 (-) True LOC110537119
XM_021622904.2 mRNA downstream 71636 18336851 ~ 18387111 (-) False LOC110537119
XM_021622903.2 mRNA downstream 161009 18289970 ~ 18297738 (-) False LOC110537118
XM_021622908.2 mRNA upstream 14909 18486339 ~ 18488673 (-) True rbp4l
XR_005034899.1 mRNA upstream 42118 18513548 ~ 18536462 (-) False LOC110537126
XM_021622914.2 mRNA upstream 49277 18520707 ~ 18536450 (-) False LOC110537126
XM_021622917.2 mRNA upstream 49277 18520707 ~ 18536450 (-) False LOC110537126
XM_021622912.2 mRNA upstream 49277 18520707 ~ 18536459 (-) False LOC110537126
TU1190787 other downstream 11496 18446681 ~ 18447251 (-) True LOC110537121
TU1190652 other downstream 265524 18192234 ~ 18193223 (-) True G1044761
TU1190582 other downstream 359025 18097563 ~ 18099722 (-) False G1044692
TU1190580 other downstream 359025 18097652 ~ 18099722 (-) True G1044692
TU1190557 other downstream 400355 18056111 ~ 18058392 (-) True G1044671
TU1191128 other upstream 342472 18813902 ~ 18815394 (-) True G1045201
TU1191233 other upstream 388432 18859862 ~ 18905106 (-) False LOC110537130
TU1191234 other upstream 388432 18859862 ~ 18868059 (-) True LOC110537130
TU1192375 other upstream 1084848 19556278 ~ 19558669 (-) True LOC110537144
TU1192719 other upstream 1442409 19913839 ~ 19938505 (-) True LOC110536814

Expression Profile