RNA id: XR_005034896.1


Basic Information

Item Value
RNA id XR_005034896.1
length 2520
RNA type mRNA
GC content 0.50
exon number 15
gene id LOC110537126
representative False

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 18513211 ~ 18538625 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTACAGTAGACATGTGACACTGGTGGTTCAGTGGAGATGAAAACAGCAGTGGGGCTGCTTGCAATAGGCAAATACAGGAGATGAATAGAAAGTGATAAGGCTGCTGTACTTATAACTCAATAGGAGTCCCTCTGCAGAGAGGGGAAGTTGTTAAAAGCACACACACTGAGGTCACaattgcttacacacacacacacacacacacacacagaggaactcATTCACATGCACAAACAAAGACTCTCCCCTACCCAAGGACCACCAGCCCACGTACAGACTGGATAGATTCCTTAGGCGCTGACTGTTCCCACTATGCAGGACAACAAGTCTGATGTGAAGGCCATCATGGCTCGCTTCAACACGGGGGGAAATGCTACAGAGGGTATCTCCTCAGAAGGTCCAAAAGCTACAGTGCACCCCACCCTGTCCTCAGGACCCCCCATCCAGCCTAAGAAACATGCCCTGGAGACCAGCCTCTCAGGCAGCGCAGCCTCCACCGCACCCAAACCCAACTTCCTCAAGAGCACCATCTCCACCAAGAGCGCTCCAGAAGTCAGGGACTTTCCCAAAATCAAAGTTATCCCTAGTAAGTTTGGAAACACCCAAGAGGACAGCAAACCCTCCTTTGTCAAACAGTACCCCTATAAACTCAAACCACCTGGCCCAGAGATATCCCAGGATGCTGAGGTCAAAAGCCCTTTGCCCAAACTCCCTCTCCAGAAGCCATCTCTGAGCTTAACCTCGTCTGACACCAAGTCTGCCTTTCCCAAACCTCCCCTGGGTGTGGCCAAACCCTCCTGGGTCAAAGACAGCAGCCCCAAACCTGACGATAGTGGGGGTACCTCGAACTCCATCCCACCCAAAATACCCCCTTCCAAAAAAAACATAATCTCCATTGCAAAGATGAGTCTACAGACAGAGGATAGTGTGGATGGAGCAGTGGATTCTACAACCAAACCACTGGGAGCAGCTTCTATCCTCAAACCCTCCAACTTCAGGACTGCACAGAACATGTCCAACAGAGGAGATACCCTATCTGAGAATGGGGTAAAGGAAATAACCAAACTTCCCCTCACTTCCAGCGACTCTTGTCTTCCTATacctacagccagtaagacacccAGCTTCATTAAGAAGCCCCTGGGTCCCAGCTCCCCAGTCGTGGGGGTGAGCAACAGTAGCCCGCCCCCCCCCAAATTGAACCCCATGCCCAATTTCCTGGCAATAGGGACTGCGCCAGCCAAACCCAACCGGCCTCCTAGGGTGACCTTGGATAAGTTCAAGAAGGGCACAGAGGCTAGTACCGATGGTCCTGCTGGGTTAAAGAAGGGATCTGTTCCACCAAACCCTGCCTCTCACCCCAGTAACCATATGGCCCCACCCCTGCCCTCTCATCCCATGGCCCTTAGCCTGCCCCCGCGACCACCAGAAGCCATAATCCAACCTGACCCAGATGAGAACTATGATGATGTGGGATTAATGAacaatcctccaccccctccctctggAGGACATCCTAGTCAAAAGACTAAGGACAGTGAAAGTGATGAAATGTATGAAGATCTTGACGAAAGATGGGGGGCAGTGGAATCAAAGgagcaggagaagaagagagagagggaggagaaaaaacGACAGGTGGAAAGGAAAGAACAGAAAGAACGTGAGAGGAAAGAACAAGAGGCCAAAAGGAAATTCAAACTGACTGGTCCACTGAAGGTCATCCACAGGGTCCAGGCCAGAGTGGACAGTAAAGGGAGTAAGATGGACCTGGGGCTGAAGCAGGGAGAGTCTATTGACATCATGCGTGTTTTGGACAACCCAGAAGGACGCTGGCTAGGGAGGTCACAGGACGGCTCCTATGGCTATGTGAAGACTGAGTCTGTTGAGATTGACTTTGACACCCTGAAGCGTCAGGGTGTGTCTATATCCAGTCATATGGAGCACGAACCGGAGGTATACGATGATGTGGCCTTTCAGAATGACCTCAGCAGTGGGATTAAGAGTGCAGGAATGGTTCTTCCTTCCCCTCCTGATGAGGATAGTGACATATATGACGATCTTGACGATTCAAGCTTCAACGTCAGGGCTTCGACCAGTGGAGGAAAAGCCCAGGCAGCAAAATTGAGTAATACCATAAGATGGATCAGGAAATACACTAGTATCCCCACCTTCCCAGTTTGACCAGACAGGAAATACTGAATCTTCTGAAGTCAGTGATTCAGATATTTATGATGATGTTGACACCACTAACTTCCATCTGCCTCCACCTATTAGCAGTCTCCCACTAAGTAAAACCAAGGGTAAGGCTGAGGACAAATATCTTAAAAAGCTAAAGAAACTTGAAAAGGAAGAGAAGGAATTCAGAAAGAAGTTCAAGTATGATGGGGAAATCCAGGTACTCTATCAGGTGACCATCATTTCCACCTTGGCCAATAAGAAGTGGAGCAGTAAAGCTCTGTTGTTGAGACCTGGGGAGACTCTGGATGTCATCGTTAAGCCTGTAGACAACAAACTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1190811 lncRNA downstream 4360 18513415 ~ 18517224 (-) False LOC110537126
TU1190813 lncRNA downstream 4360 18513557 ~ 18517224 (-) True LOC110537126
TU1190814 lncRNA downstream 4409 18513390 ~ 18517175 (-) False LOC110537126
TU1190836 lncRNA upstream 11749 18548214 ~ 18548590 (-) True G1044924
TU1191065 lncRNA upstream 227455 18763920 ~ 18767027 (-) True G1045141
TU1191085 lncRNA upstream 249842 18786307 ~ 18786571 (-) True G1045161
TU1191096 lncRNA upstream 255556 18792021 ~ 18792235 (-) True G1045172
TU1191130 lncRNA upstream 279046 18815511 ~ 18815929 (-) True G1045203
XM_021622908.2 mRNA downstream 32911 18486339 ~ 18488673 (-) True rbp4l
XM_021622413.2 mRNA downstream 50154 18458747 ~ 18471430 (-) True LOC100136215
XM_021622411.2 mRNA downstream 57129 18458747 ~ 18464455 (-) False LOC100136215
XM_036936681.1 mRNA downstream 57130 18458747 ~ 18464454 (-) False LOC100136215
NM_001124486.1 mRNA downstream 59090 18458747 ~ 18462494 (-) False LOC100136215
XR_005034900.1 mRNA upstream 9320 18545785 ~ 18553302 (-) False LOC118937637
XR_005034901.1 mRNA upstream 9320 18545785 ~ 18558011 (-) True LOC118937637
XM_021622924.2 mRNA upstream 24291 18560756 ~ 18566092 (-) True ccdc80l2
XM_021622926.2 mRNA upstream 186728 18723193 ~ 18746579 (-) True fgf10a
XM_036939132.1 mRNA upstream 296654 18833119 ~ 18907377 (-) False LOC110537130
TU1190787 other downstream 74333 18446681 ~ 18447251 (-) True LOC110537121
TU1190652 other downstream 328361 18192234 ~ 18193223 (-) True G1044761
TU1190582 other downstream 421862 18097563 ~ 18099722 (-) False G1044692
TU1190580 other downstream 421862 18097652 ~ 18099722 (-) True G1044692
TU1190557 other downstream 463192 18056111 ~ 18058392 (-) True G1044671
TU1191128 other upstream 277437 18813902 ~ 18815394 (-) True G1045201
TU1191233 other upstream 323397 18859862 ~ 18905106 (-) False LOC110537130
TU1191234 other upstream 323397 18859862 ~ 18868059 (-) True LOC110537130
TU1192375 other upstream 1019813 19556278 ~ 19558669 (-) True LOC110537144
TU1192719 other upstream 1377374 19913839 ~ 19938505 (-) True LOC110536814

Expression Profile