RNA id: TU1190810


Basic Information

Item Value
RNA id TU1190810
length 1324
lncRNA type sense_over
GC content 0.36
exon number 4
gene id LOC110537126
representative False

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 18513211 ~ 18538625 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTTACAACAGCAATATGGTACCTCCAGTTGTAGTGTCGCCTGTCATCAagACAGCAAGGTGGTCATTCTTGCTCATTGGCATGTTCTATGGCAAACAGAGATATGACTATCTGAAGCCAAGAGCTGAGGAAGAGAGGCGTGTTGAGGAATCAGAGAAGAAGATACGAGAGGAACAGGAAAAAATAGCCAAAGCACTTGCGGAAGCCTCTGAAGACACCATCCTGAAATGAACTTATGGATCTACTCTGTCATGTTAGAAGAAGAATAAATGCATGATAAACATAATTGAATGTATTACAGAATTCTTCTCTGGTATATCTGTTTAGATGGTAATGTGCTTACAATTATTAGTATAATACTAACAACTTCCAGTACTCTCAAAACACATCCAAAATGTGTTTTGACATCTAAATTCAACCAGATGTCGAATTTCATATAACATAACATTTTGTATAATTTTAATCTCAAATCAGAAAACATTTGTCTATACCCTTGTGTATTCTACTGACTAAATGGATAGGAATAAATAGTAAAGTTAACTGTCTGGTTCCtaggtgtatactgtatgtctgggACTGTCACCCTGCCCTTCAATGTTAGGAGGAAGGACTAGGTTTTAATCCAGGCCCAGTTTAGCATAAATCCCAGGATTCAGGTCATAGGCCAATCTAAGAAAGTGCTGAGTCAACACTACTGCCACACACTCTTCTGCCTAGGTTCAACCATGGAGATCAAGTGAAGACTCTAGTGCCCGAAATGCAGATGCCATTTTGGGACAGATAAATGATGTGATGTGTATGGGTTTAACACAGAATAGTCATCTACCTGGCCAATTTGTGATTACATTCATGAATATTTGACATGCACATACTTTTTCTATAATCTGAATTCATTTTGTTGTAACTTGTTCTTGCATTTCTATCTGTATGCTGCTGGGCCAGGGGTAACTTAGATACTTTGACCCAACCTCTGGCCATATgcatacaaacaatagtatattTTACAAATGAGTTTTCCTGTTATATAAAACTAACAAGATACCATTAGACAAAATGCAtcctttaaaaatgtatttactttATTTTGGTTATTGTAGATAGCACATACAGAACTTCAGAATTCTGGTCATGTTTACATGCAAATATTTGTAACAGCAAATTGGGGAATAAAATGTTAGTTGCAATTTTTAATGGTATGGTTAAGCAAAAATAATTGCTGCTTCTAACAAATGGGTACTTGATATTTAGTTTAATGTCGGCACAGAGCATAACAGTAATGTTGCACTGACGTTCATAGAGAATCTATGTATTACCTATTAATCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1190772 lncRNA downstream 60719 18422833 ~ 18452696 (-) True G1044867
TU1190765 lncRNA downstream 96891 18416286 ~ 18416524 (-) True G1044861
TU1190752 lncRNA downstream 118042 18395070 ~ 18395373 (-) True G1044848
TU1190720 lncRNA downstream 166900 18312585 ~ 18346515 (-) True G1044817
TU1190714 lncRNA downstream 213033 18300130 ~ 18300382 (-) True G1044812
TU1190836 lncRNA upstream 31039 18548214 ~ 18548590 (-) True G1044924
TU1191065 lncRNA upstream 246745 18763920 ~ 18767027 (-) True G1045141
TU1191085 lncRNA upstream 269132 18786307 ~ 18786571 (-) True G1045161
TU1191096 lncRNA upstream 274846 18792021 ~ 18792235 (-) True G1045172
TU1191130 lncRNA upstream 298336 18815511 ~ 18815929 (-) True G1045203
XM_021622908.2 mRNA downstream 24742 18486339 ~ 18488673 (-) True rbp4l
XM_021622413.2 mRNA downstream 41985 18458747 ~ 18471430 (-) True LOC100136215
XM_021622411.2 mRNA downstream 48960 18458747 ~ 18464455 (-) False LOC100136215
XM_036936681.1 mRNA downstream 48961 18458747 ~ 18464454 (-) False LOC100136215
NM_001124486.1 mRNA downstream 50921 18458747 ~ 18462494 (-) False LOC100136215
XM_021622914.2 mRNA upstream 3532 18520707 ~ 18536450 (-) False LOC110537126
XM_021622917.2 mRNA upstream 3532 18520707 ~ 18536450 (-) False LOC110537126
XM_021622912.2 mRNA upstream 3532 18520707 ~ 18536459 (-) False LOC110537126
XM_036937113.1 mRNA upstream 3532 18520707 ~ 18536460 (-) False LOC110537126
XM_021622918.2 mRNA upstream 3532 18520707 ~ 18538625 (-) False LOC110537126
TU1190787 other downstream 66164 18446681 ~ 18447251 (-) True LOC110537121
TU1190652 other downstream 320192 18192234 ~ 18193223 (-) True G1044761
TU1190582 other downstream 413693 18097563 ~ 18099722 (-) False G1044692
TU1190580 other downstream 413693 18097652 ~ 18099722 (-) True G1044692
TU1190557 other downstream 455023 18056111 ~ 18058392 (-) True G1044671
TU1191128 other upstream 296727 18813902 ~ 18815394 (-) True G1045201
TU1191233 other upstream 342687 18859862 ~ 18905106 (-) False LOC110537130
TU1191234 other upstream 342687 18859862 ~ 18868059 (-) True LOC110537130
TU1192375 other upstream 1039103 19556278 ~ 19558669 (-) True LOC110537144
TU1192719 other upstream 1396664 19913839 ~ 19938505 (-) True LOC110536814

Expression Profile