RNA id: XR_005035321.1



Basic Information


Item Value
RNA id XR_005035321.1
length 70
RNA type mRNA
GC content 0.41
exon number 1
gene id LOC118937912
representative True

Chromosome Information


Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 19298263 ~ 19298332 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TTGCAATGATGACTTTCTTAGGACACCTTTGGATTACCCATGAAAAGAAATGTGAACGAGGCTGAGCAAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1191675 lncRNA downstream 163106 19134944 ~ 19135157 (-) True G1045703
TU1191671 lncRNA downstream 167761 19130054 ~ 19130502 (-) True G1045699
TU1191669 lncRNA downstream 169465 19128576 ~ 19128798 (-) True G1045697
TU1191666 lncRNA downstream 173708 19124285 ~ 19124555 (-) True G1045694
TU1191665 lncRNA downstream 177762 19120250 ~ 19120501 (-) True G1045693
TU1191908 lncRNA upstream 71463 19369795 ~ 19370060 (-) True G1045900
TU1191909 lncRNA upstream 72068 19370400 ~ 19370655 (-) True G1045901
TU1192267 lncRNA upstream 80687 19379019 ~ 19379328 (-) True G1046165
TU1192269 lncRNA upstream 81972 19380304 ~ 19380595 (-) True G1046167
TU1192272 lncRNA upstream 83439 19381771 ~ 19381996 (-) True G1046170
XM_021622936.2 mRNA downstream 6361 19287895 ~ 19291902 (-) True LOC110537135
XM_021622934.2 mRNA downstream 208183 19086352 ~ 19090080 (-) True abraxas1
XM_036937121.1 mRNA downstream 212819 19079654 ~ 19085444 (-) True LOC110537133
XM_036937122.1 mRNA downstream 213284 19079654 ~ 19084979 (-) False LOC110537133
LOC110536810 mRNA downstream 220935 19066033 ~ 19077328 (-) False LOC110536810
XR_005035320.1 mRNA upstream 1117 19299449 ~ 19299518 (-) True LOC118937911
XR_005035322.1 mRNA upstream 1994 19300326 ~ 19300395 (-) True LOC118937913
XM_021622938.2 mRNA upstream 8864 19307196 ~ 19348466 (-) True LOC110537137
XM_036937124.1 mRNA upstream 51246 19349578 ~ 19352476 (-) True LOC110537138
XM_036937125.1 mRNA upstream 73803 19372135 ~ 19374987 (-) False LOC110537139
TU1191233 other downstream 393157 18859862 ~ 18905106 (-) False LOC110537130
TU1191234 other downstream 430204 18859862 ~ 18868059 (-) True LOC110537130
TU1191128 other downstream 482869 18813902 ~ 18815394 (-) True G1045201
TU1190787 other downstream 851012 18446681 ~ 18447251 (-) True LOC110537121
TU1190652 other downstream 1105040 18192234 ~ 18193223 (-) True G1044761
TU1192375 other upstream 257946 19556278 ~ 19558669 (-) True LOC110537144
TU1192719 other upstream 615507 19913839 ~ 19938505 (-) True LOC110536814
TU1193559 other upstream 1197233 20495565 ~ 20496428 (-) True G1047325
TU1193449 other upstream 1211284 20509616 ~ 20599427 (-) True LOC110537156
TU1193723 other upstream 1403208 20701540 ~ 20702040 (-) True G1047473

Expression Profile