RNA id: XM_021622945.2


Basic Information

Item Value
RNA id XM_021622945.2
length 2604
RNA type mRNA
GC content 0.43
exon number 8
gene id LOC101268945
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 19445394 ~ 19449219 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AATCTTGAATAGATAATtcaatttttctctctctctcgctctccctctctctcttctctctctctcttgctctctctgtgtgtgtgtgtgtctctcctcccttccttctgCTCTCCTCTGTCACATTTATACTGACAGTTCAATGAGACAGCTGAGACATTTTGAGTTCCTTGTGCGTGTGTGCGCCAGGGTCTCACCTCTGTATCTGGGGGCACTACATCGTGTGACTGCTTTGTGAGAAATGGCATACAGCCTATGGATTGCCTTACTCATGCTCCCGGTTCTGGTGCACTCTCAAAGTGGAGAAGAATTGGTTGACAATGAACCCAGAATACTCTGCACCTCTCATCTCAGTGTCTCGGCAGCAAACAGCCTAACCTGCCACCTTGATGATGACACCGATGATGAAATGGAGGACATAAAAGTCATGAGTCTTTGCTACACAGATGACAAAAAGCAACGCTGTTTGAAAGAGAAGGGGAATAATGTCACATTTACGGACCTGGACACTCTGCAATCGTATAATCTCACCGTTCAATTAAAACGAGGTGGCACATTTTGGAAAACAATGAGTTTGAAAAAAATAATTAAACCCAGGAGTCCTTGGGTGGTGAATGCCACATTTCTGAGGAGCTCCAACCGGGCTCTTATATACATTGGGAATCCATACCTGAAGGATTACCTGAAACCCAGCAATCAACTGTTCCAACTTCGCATCTGGAGTGTCAAAAATACTCTGGTTAAAAACATAACCTATCAGCCTCTGATCATTGAGGGGGACGAGTACCTCCATAAGAACACAGAGTATCATGTCAAGGTTCGAGCCAAGCCAAGCGGAGGGTACTTTGATGGCAGTTGGAGTGAGTGGAGCGCCTCTATCAGTTTCAGCACCAACACAGAGACAGACGTGCAGGTGCTTTCCTATTCTCTCATCGTGCCCATTGCTTCTCTGCTGTTGGTTACTTTGGCAGTTGGTATTTTCTGGAGAAAACAAATACATTCCTTCATATGGCCAAGCATTCCACATCCCAAACACACACTTCTCCAGATCTCCCAGACCTATGAGCCAATGAAGCAGGGCCCACCTGTGAGCTTTAACCCCGAGGTGTTCAGTGACCTCAACATCCAGCTGGTGGAGCCGGACAAGGAGCAAGACCTTACctccctaccccctgactctgACTCCCATCGACTCGCTGAGGTCAAAGATCAATACCTCATTCAAGAGCGTGATGGGGATACGACGTCCTGCCAAACCACCAGTAGTGGAGGGTCGGAGACCATACTGCTTAGGTGTGAGTCCCCAGGAGTGCACCTCAACGGTGGGGCGGGGAGCAGTAGGAACAGTGGCTCCACCGTGGGGATCCTGGATCTGAGGAGTGACTTTGAGAGCGTGGAGACAGACGACAGTGATGGTAACATTGGTCCTGAGGGGCTAGGTGCTACTCAGCAAGGAGGCAAGGATGAGGCTTATGTCACCATGTCTAGTTTCTATCAGatccagtgagagagagatggagagacagacagagagggagcgagacagacagacggaattATCTATTCAAGATGAATTATAGCTGCTTATTACATTCTTACTCTGAGTGACTTTGGCTGCTTTTATTTGAAGTCTATTTAATTCACCGTGACTCAAACTGACTATCCACTGACCCCCAGTATCACGAGACTAGCAGAACTCAATGCACATGTTATTTACAAATGATAGGAGACAGAACAGGAATCATCCTCATTGTGTTTGTTTGGTTTTGTGTTATTAATTTGTTGCTAGTTGCTAAGAAACAAGACAAGGGAGGACTTAAACAACTTGAAATACAACGCTGCACCTCCCTTATTATCCTTTGTGTTTTCACATCCCATACTATATTAACCCCGTCGGTATACTGACGAGCCACCATGACACCTTGGCGTTATACATACTGCTGCTTCATATCACAGAGATACTCTTTACCATGACAACAGCTGCTAAATAAacctagggctctattcaatccataTTGCGGAAGTTCAGTGTTACAGCATGAATGAAATATAAAGGTAATGTTCCCGTGTTagtggagactgcattcatgATAAACgttgcatatgtcggctcaatcggaactTAACCTTCAATTTCTATTGCGCAATATGTTACACTTCAGTGAtatggattgaatagagcccctagAATGTCAATTCTTCAGGGTTTAAACCCTTCTAAACATAATTTAATCACAGCTTATGTGTTTGTCATTATGTTTTACATCTTTTGCACATAAGTGATTGTATTTCCTGCACAGTTACCagtatgttatttttttttttacactgactTGGATGTATTAtagtattatactatactatgtacTATCATACATCATAGTTTTCAATGCAGAACGCTTTATTATTTTCTTGAACACTTTGTGAGACTTTAGCAGAGCATTAAACATAAAGTCATCATCGGCAAATTACtgctttgtttttattttactgtACGATCCGGTATTTGTATATTTTAATCTGACAAATGTGACAACATTATCTGTGTAGAAATGACCACGTTGTTACATTTtgtgtttaacatttttattaaaCAGATTAATT

Function

GO:

id name namespace
GO:0019221 cytokine-mediated signaling pathway biological_process
GO:0016020 membrane cellular_component
GO:0004896 cytokine receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1192319 lncRNA downstream 4067 19441119 ~ 19441329 (-) True G1046214
TU1192301 lncRNA downstream 24994 19419802 ~ 19420402 (-) True G1046197
TU1192287 lncRNA downstream 44078 19400907 ~ 19401318 (-) True G1046183
TU1192279 lncRNA downstream 55462 19386995 ~ 19389934 (-) True G1046176
TU1192277 lncRNA downstream 58608 19386554 ~ 19386788 (-) True G1046175
TU1192336 lncRNA upstream 33783 19483002 ~ 19483307 (-) True G1046230
TU1192306 lncRNA upstream 50829 19500048 ~ 19501385 (-) True G1046201
TU1192348 lncRNA upstream 91133 19540352 ~ 19540622 (-) True G1046242
TU1192349 lncRNA upstream 91767 19540986 ~ 19541232 (-) True G1046243
TU1192373 lncRNA upstream 101742 19550961 ~ 19552849 (-) False LOC110537144
XM_036937126.1 mRNA downstream 37114 19372135 ~ 19408282 (-) True LOC110537139
XM_036937127.1 mRNA downstream 67562 19372135 ~ 19377834 (-) False LOC110537139
XM_021622942.2 mRNA downstream 67684 19372135 ~ 19377712 (-) False LOC110537139
XM_021622941.2 mRNA downstream 67728 19372135 ~ 19377668 (-) False LOC110537139
XM_036937125.1 mRNA downstream 70409 19372135 ~ 19374987 (-) False LOC110537139
XM_036937132.1 mRNA upstream 10149 19459368 ~ 19534354 (-) False LOC110537143
XM_036937131.1 mRNA upstream 10149 19459368 ~ 19535181 (-) False LOC110537143
XM_036937133.1 mRNA upstream 10149 19459368 ~ 19535181 (-) True LOC110537143
XM_021622950.2 mRNA upstream 101734 19550953 ~ 19569457 (-) False LOC110537144
XM_021622949.2 mRNA upstream 101734 19550953 ~ 19569458 (-) False LOC110537144
TU1191233 other downstream 540290 18859862 ~ 18905106 (-) False LOC110537130
TU1191234 other downstream 577337 18859862 ~ 18868059 (-) True LOC110537130
TU1191128 other downstream 630002 18813902 ~ 18815394 (-) True G1045201
TU1190787 other downstream 998145 18446681 ~ 18447251 (-) True LOC110537121
TU1190652 other downstream 1252173 18192234 ~ 18193223 (-) True G1044761
TU1192375 other upstream 107059 19556278 ~ 19558669 (-) True LOC110537144
TU1192719 other upstream 464620 19913839 ~ 19938505 (-) True LOC110536814
TU1193559 other upstream 1046346 20495565 ~ 20496428 (-) True G1047325
TU1193449 other upstream 1060397 20509616 ~ 20599427 (-) True LOC110537156
TU1193723 other upstream 1252321 20701540 ~ 20702040 (-) True G1047473

Expression Profile