RNA id: XM_036937137.1


Basic Information

Item Value
RNA id XM_036937137.1
length 2557
RNA type mRNA
GC content 0.45
exon number 13
gene id LOC110537146
representative False

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 19580903 ~ 19606084 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCTCGGTAGTAAACACTGGATATGACTGTTCATTTACACACGCAGCAAAGGCTACGCGACAGACAACTGACTGGAGAGTGCCAAAATCAACAAATCAGGAGTATCAAGCTTTTGACACCAAAGGAGCAAATCACCACCTTTATCTGGATTCTTCTTTATTTTCTTGAGGTTGTGGTTATTTTACTACGGTAGTTTATCACATCTTCAGATCCGAAGAATGAGAGGGAATCTTTCCCCGAACGAAGATATTTCAGGGTATTATTCAATGATGCCTGTCTCGGACTTCCATGCAAAGCCCTCCTGTACGATGGAGCCCACGGACAGTATGTGTGGAGCGGGAGGAGCTGTCACCGCCAGACCGCTGATGGGGAACATCTCTTCGTGGCAGCACTCTGGGGATGGAGGATGCGCGCAGGACGGAGCTGAGGAGTTAAACGAGAAAACGGTGCTTGCCCCACCGGTGTTCGTATTTCAGAAGTCTTTCACGCTATCCATGAAGaggagagcagagagatgggaggagggatCAGTTGTGGGAATCAGTCCAAACAAACGAGCCCGATCCTTCACATACCCTAATCCTAACAGCAGAATGAGGAAAGGCTCCTGTGACGGCAGTAGACGAGTGCGAACAAATTCCCACTCTTTTCCCCCACCGCCTCCAGTGACACCTCTGAACAGGGTCAGAAGGTCATTACTTCAGCCTGCACGTCTCCTCGCCCCTCAACCCTGGAACATCTCCTCACAGCCACACATATCTGAGGTGAGCCATGATCCTTCAAATGATGTCTCCAGCATCTCAACAGACTGCTCCTCCACTGTTGGTCTATTACATCAAAAGAAACCCTGTCAAGTTCACAGATCGAAGCCAGACGGTACCACCTCAGACAGGGTCCAGTTTGTGTTTGGGGAAAACATGAGTGAAAGAGTCTTGAGACCACAGAAATCCCCTAGCAGTGAAGATTCTGATTGCAGCTCTGATTCTGAGTCTTCCACCTCTGAGTCAAGTTATAAAGGTGCTGTGTGGAGCAGTCTGAGGGAGTCTGCTGCAGCTTACACAGCATCCTGTGGGAGGCAGCATGTGCTCAGGCTCAGGCGGGTTCAGCTGTTCActggggaggagaaggaaagcAATGTGGTCCAGcTGACCTGCAGACTGTTTGTCCTGGAAAAAGGAACTCCGTCATGGACTGAGCGAGGAAGAGGAGTCCTGCGACTCAATGATCTAGCATCAGGGACCAAAAGAGGGCTTCAGTCCAGGATAGTGATGAGGCACCAGGGCAGTCTCAAGGTTATCCTCAACACCAAGCtctggccacacacacacctacgtcGCCCTGCCCGCCGGAACCTCCAGGTGACGGCCACTGACGTGGAGACTCAGGCCGTTCGGGTGTTCCTCATTCAGGCCAGCGCCAGGGATGTGGCTCGCCTCTACGTGGCCATCCACCATCGGCTGGTAGGCCTACGGGCCAGTGCTGCTGGGAGGGAGGCAGAGGCTGCAGGGGGCAGGACCAGGGAGGGGCACTGCAACAGTgagaatgaagaggaggaggaagaggagagacaacagaaagaaagagaagaaaggcTGCTATTGACACGATTGCGACCTGTGGTTTGTGATTGGATACACAGTAAACCTAGTTTGGATTCTTGGTGACATGACATCATATCCTGACCTGGACCATCTGAACAGAACTTTCAAGAGAAACATCAAGAAACAGCTTGCAAAAACTTACTGCCTATTGAGCTACCATGACTGCCTTcttttaacaacaacaaaaatatatgatCATTCTATTGCCGTACTTACTTTTGTACTTCACGTTATTGTGGCAGTGTGCAAGGGGAGGGTAAACTGCCACATTATGACAGAGGGAATCTAGATGTAATGACTGATAAaaaacaattgtatttatttttgttattttattatgcATTTATAATGAATCCAACTGTTCATGCAAGTGCTATTTGTGGCTGAAGCACCCACATTAAccttatttaaaatatatttagaatatTCCCAAAAGGTTTTGTTCTTCTGTATTTCTTTTATAAGCATTATGTTTTATATGTTGTGTTTTAAAAACACCTTATGATCAACGTAATGATTTTGAAACCATTTTTGTAGGTCTTTCACTACAAACAGAATATAATATGTATCTATCTATTTCAACTGTGAAACAAACACAATAGCTTTATTGTTAGCTGTTTCAtttatacagtacattactgaCAAACAACAATCTCAAGGTTGTGGTACACTCACCTTTTCTACACAGTACTAAATGCATGCCTCTGCCTACCTCTGTAATTGCTACACAAATGtgagaaaacatttaaatgtttttaatggATTTTAAGTTCTATTACCTAGTGTATTGTCAAAATCAATTAACTTAAAAGGGTAATCCTGCATAAAAGCAAACATGACTAGCATCTAGTTCATATTCTGAtaagtatatattatattaatctgCTTCTGGTAATATCACCATGTTATGTGAGCAGTTATGTCATCGTGATTGATAAAACTGATTTTCTGATACAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1192360 lncRNA downstream 1037 19579042 ~ 19579866 (-) True LOC118937638
TU1192369 lncRNA downstream 2526 19577943 ~ 19578377 (-) True G1046252
TU1192359 lncRNA downstream 4018 19576363 ~ 19576885 (-) True G1046248
TU1192373 lncRNA downstream 28054 19550961 ~ 19552849 (-) False LOC110537144
TU1192349 lncRNA downstream 39671 19540986 ~ 19541232 (-) True G1046243
TU1192412 lncRNA upstream 35743 19641826 ~ 19644593 (-) True G1046295
TU1192509 lncRNA upstream 136931 19743014 ~ 19745160 (-) False G1046373
TU1192505 lncRNA upstream 137008 19743091 ~ 19745160 (-) False G1046373
TU1192506 lncRNA upstream 137008 19743091 ~ 19745160 (-) True G1046373
TU1192581 lncRNA upstream 236806 19842889 ~ 19843293 (-) True G1046438
XR_005034902.1 mRNA downstream 669 19578405 ~ 19580234 (-) False LOC118937638
XM_021622949.2 mRNA downstream 11445 19550953 ~ 19569458 (-) False LOC110537144
XM_021622950.2 mRNA downstream 11446 19550953 ~ 19569457 (-) False LOC110537144
XM_036937131.1 mRNA downstream 45722 19459368 ~ 19535181 (-) False LOC110537143
XM_021626098.2 mRNA upstream 140228 19746311 ~ 19747504 (-) True LOC110539128
XM_036937156.1 mRNA upstream 291245 19897328 ~ 19938577 (-) False LOC110536814
XM_036937157.1 mRNA upstream 291245 19897328 ~ 19938578 (-) False LOC110536814
XM_036937154.1 mRNA upstream 291245 19897328 ~ 19938583 (-) False LOC110536814
XM_036937155.1 mRNA upstream 291245 19897328 ~ 19938584 (-) False LOC110536814
TU1192375 other downstream 22234 19556278 ~ 19558669 (-) True LOC110537144
TU1191233 other downstream 675797 18859862 ~ 18905106 (-) False LOC110537130
TU1191234 other downstream 712844 18859862 ~ 18868059 (-) True LOC110537130
TU1191128 other downstream 765509 18813902 ~ 18815394 (-) True G1045201
TU1190787 other downstream 1133652 18446681 ~ 18447251 (-) True LOC110537121
TU1192719 other upstream 307756 19913839 ~ 19938505 (-) True LOC110536814
TU1193559 other upstream 889482 20495565 ~ 20496428 (-) True G1047325
TU1193449 other upstream 903533 20509616 ~ 20599427 (-) True LOC110537156
TU1193723 other upstream 1095457 20701540 ~ 20702040 (-) True G1047473
TU1193905 other upstream 1256509 20862592 ~ 20866081 (-) True LOC110537162

Expression Profile