RNA id: XM_036937154.1


Basic Information

Item Value
RNA id XM_036937154.1
length 4694
RNA type mRNA
GC content 0.53
exon number 17
gene id LOC110536814
representative False

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 19893417 ~ 19938584 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATACTCAGGGTAGGTTGCGCCCGGTGAGTTTTATAGCAACTGTTGCCCTGTGAGGCAGCGCCATAGTCACCGTAGTCCTGGCGACTGTAacccaccaacaacaacaacctctcgTTCCAtcattaccaccacaccatcctcatcctcatcaacCAGTCCTCAGCCCAGgCGCCATGCAGACCCCTGAGGCAGGCGCTGAATCCGCCTCCACTGTCCACACCGCTGTGCCTGTGCAGCCTGCAGGCTCCGCCCAGCAGGTGTcctctcagGCCCAGACTGTTCAACAGGTTCAGCATGTATACCCAGCACAACAGGTGCAGTACGTGGAGGAGAACAGTGGCGTCTATACCAACGGGAACATACGGACATACTCGTACTCCGAGCCCCAGCTGTACAGCCAGAACAGTGGAGGGAGCTACTTTGACACGCAGGGCAGCTCATCCCAGGTGTCTACGGTGGTGTCATCCCATGGCATGGCCAACAACGGCGGGGGGAACGGGGGGCTGACCATGGGTCTGGCTGGGGGGCAGATCATCAGCAGCTCTGGGGCCTACCTCATCGGGGGCAACACCATGGATAACTCTGCCCCCCACCCAGCAGCCCAGACCACCCGAGCCTCCCCGGCCACTGTGAGTATTGAAATGGCGATTGAGACGCTCCAAAAGACTGAAGGTTTATCCAGTCAGAGAAGCTCACTACTCAACAGCCATctgCAGTGGCTACTGGATAACTATGAGACAGCGGAGGGGGTGAGTCTGCCTCGctccaccctctacaaccactaccTGCGCCACTGCCAGGAGCAGAAGTTGGACCCGGTCAACGCTGCTTCCTTTGGTAAACTCATCCGCTCCATCTTCATGGGGCTCCGCACGCGTCGCCTGGGCACACGagggAACTCGAAGTACCACTACTATGGGATCCGGTTGAAGCCGGACTCTCCTCTCAACAGACTGCAGGAGGACATGCAGTACATGGCCCTCAGACAGCAGCCTGTCCAACAGAAACAgagGTTTAAGCCGATGCAGAAGGTTGATGGTGTATCTGGGGAGAACTTCTCAGGCGGAGGCCAGCACACCCCCAGTGCAGCGGAGCAGACTGTCATCGCACAGAGCCAGCACCACCAGCAGTACCTGGACACATCGCGGGCCCTGCCAGACTTTGTGGAGCTGGACCTGGGAGAGACCAACGTGGACAATGTCGGCCCAGACGACATCAAAGCTCTCCAGTCACTCTACAGAGAGCACTGTGAGGCCATTCTGGATGTGGTGGTCAACCTCCAGTTCAGTCTAATAGAGAAGCTGTGGCAGACTTTCTGGCGCTATTCTCCTTCTGACTCAGTGGAGGGCGCCACCATCACAGAAAAcagTGGTGTGAGTGAGATTGAGGTGAATCTGATCCAGTATATGAGAGTATGTGTAACTCTTGAACCTGGTCTCCACAGTGGTGTGAGTGAGATTGAGGTGAATCTGATCCAGTATATGAGAGTATGTGTAACTCTTGAACCTGGTCTCCACAGTGGTGTGAGTGAGGTGAATCTGATCCAGTATATGAGAGTATGTGTAACTCTTGAACCTGGTCTCCACGGTGGTGTGAGTGAGATTGAGGTGAATCTGATCCAGTATATGAGAGTATGTGTAACTCTTGAACCTGGTCTCCACAGTGgtgtgagtgagattgagggccgTCTGCCCTGCTGCAGACTGCTGGTGCTCTGTAGGAACGAGGCTGTGCTCAAGTGGATGAGTTCCTGTGACCACCTGATGTACCAGGCCCTAGTGGAGATCCTCATCCCTGATGTCCTCAGACCCATCCCCAGTGCCTTGACTCAAGCCATCCGCAACTTTGCCAAAAGCCTGGAAGGCTGGCTCAACAATGCCATGAACACCATTCCACAGAGAATGATCCAGACCAAGGTTGCCGCTGTTAGTGCCTTTGCTCAGACGCTGCGTCGCTACACTAGTCTGAACCACCTGGCCCAGGCAGCACGCGCCGTGCTGCAGAACACCTCCCAGATCAATCAGATGCTCAGCGACCTCAACCGCGTCGACTTCGCCAACGTGCAGGAGCAGGCGTCGTGGGTGTGTCAGTGTGAGGAGGGTGTGGTTCAGAGGTTAGAGCAGGACTTCAAGGCCACCCTGCAGCAGCAgagctctctggagcagtgggCTGCCTGGCTGGACAACGTGGTCACCCAGGTCCTACAGCCCTTCGAGGACAGGCCCAGCTTCCCCAGGGCGGCACGACAGTTCCTGCTCAAGTGGTCCTTCTACAGCTCCATGGTGATTCGGGACCTGACCCTGCGCAGCGCGGCCAGTTTTGGCTCGTTCCACCTGATCCGCCTGCTCTACGACGAGTACATGTTCTACCTGGTGGAACACCGCGTCGCCCAGGCAACCGGCCAGACACCTATCAGTGTCATGGGAGAATTTGATGACCTCAACGCCATGTCACCTGCTAACATAGACAAAGACGAGGTGAGTGAGATGGACAGTGACCTGGAGGAGGACATGGAGGAGTCCGGGGAGCCGCTGGCCAAGCGGGAGAAGGCTGAGGTGGAACATGAGCACCAGGTGATCCAGGTGATTCAGGTGGGGGCTCTGGAGGACGGCAGTAACCCCGTGGTGGGGGTGCTCCAGCCGGGCATCCTGCACTCCCTGCCCCAGCCCCCCCAGAACCATGCTGAGCACATCCTCACCACCTCCgccgccaccaccaccatccgCCACTGCAGTGCCACCGGCAACACCTACGCCTCCGTCTGAGAGGgagatgacccccccccccccctccgccgggcaacctctcttctctctgtctctcgctgtcacGCACGTCTGCACTGTCCCCTCTGTCGTACGCTGTGTTTTCTCTGCACTCGTCTAGACacactcctcccccctccaccctgaccaGTAAGGGAGCGTGAAAAACATCACGACCACAGCTGGCGTCACACAAGCGGTGGATGGATGAGTAGAGCTAGACGGGAATGTGGATGTGGCAGAGTCATGTGGAcgggctgtctctgtctgtcatgtGGCTGTCCTCTGGGTCAGGGAGGGGGATTGGGAGGTGGGGGGGTTGTACAGGCGTGAGACACTGGCTTGACCCTACTGTAGCTGTGTAGAAGGGAAGGTGTCCTTACTTAGAGATTCACGTATTTCCTGATGTTTAAAAGCTCAAATCCAAGCCACCAGCCCCAGAAGAACAACGGCATTGATTGACAGAAAACACTTGGTTCTCTCTTAGATTGGCTTGTTTAGTATATATCTAAACAACCACACAGGTGCTATTCTCTTACACTACCAGATGTTCAGACAGAATTCAGTTGAATGacataatatttttttaaagtcatgAATCTTTCAAAGCATTGTTGAGATATGACATTTGATGGATTATGATTACTTATTGCTTGTAATGTGTTGTTTGGCATCCTATGTTTTATTGAATAGTGTATAATTGTAGCCATGATCCCCTGATAAGCACTAATGGCTTTTAGCCATGAAGTTAGTTCTGCCCATGAAGGAAGACATTCTGTTATTTATGCTGTTActatgtagagacagagagacgaggttaaacagacaagctgtagtacaCTTCAACAACACTGGCTTTTCTACACATTTCATGCATAGTGTGGGGTGTGCTTGACTTATGGCCTTGGTTTGGTTGGGTTTAGATGCTCGATAGTGTGACAAAATTACATTAGTTGGACTTATTATCTACTGATATGTTCTCAGTACAGTAGGTGTGTTTTTTTGTAGGTTTCTTGAGTTCTGAATGGACCAAAAACCAACCAACCAGAGGAAACTGGCAGAGCGAAAGAGAGCCATCATGGCCGCCACAGTTACCACGGCGAGGGTGCTGCGTGTTCTGTTTCCTGTCCCAACAGTGCCGTGTTGCAGAGCAGAGTGAATGTCAGGGATTCTATGTACCTCGGCTTCATCGTAGTGCCTTAATAACCCTTACTGCAGCTGTCCATGTAGTCCTGACTGATTGTGTGGTTGAGGGAAaggatagcacacacacacacacacacacacacacacacacacacatacacacacagagacacacacagctccTCTGCGTTACTGTCCCAGCAACAACTTTGTGTCTCTGGTGACTTGTGGCTGGATTTGGGCTGGCTCATCAGTGTTACTGCAGGGCTGGAGAGATGCAGGTTCAGAGGTGCTTGTTGAGTTCTCTGTGCTGGTTCtatgaaatgttttgtttgtttgtacctGCTCTCACTCTTTCCACACTCGAGGCCTGCTCCTGCTTTGGCCTCTGCTATTGGgtgaagtgtgtgtgcatgtgcagatGGGAGGACTTGATTGAGATGTtgattgtgtgtgtatgaatgagtCTGAACATGTGTTTGAGCACACCCACTAGTCACCCTACCTCACACCAGTGTTGCCAGCCCGTTGACACGTACAGCACAGTCACCAAACTTGTTCTGACATACTAACCGTATTACTCCTTCAACGCTGCACACTAACATTATACATGCCTGTTACACCACACACAACTAAAATACACAGTCATTTCAGCCCCTTCAGTTCTTAGTCCACAACGTCATCACCCTTATTATCTCCCTTCTAAAGTGCATATTTGTATAGTGGACCAAAAGTAGATATTTTCTGATatttaaagatatatatatatatatatataaggat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1192717 lncRNA downstream 813 19893417 ~ 19896515 (-) False LOC110536814
TU1192715 lncRNA downstream 4392 19892697 ~ 19892936 (-) True G1046560
TU1192714 lncRNA downstream 5462 19891052 ~ 19891866 (-) True G1046559
TU1192713 lncRNA downstream 6813 19890280 ~ 19890515 (-) True G1046558
TU1192711 lncRNA downstream 8492 19888587 ~ 19888836 (-) True G1046556
TU1192777 lncRNA upstream 55773 19994356 ~ 19994583 (-) True G1046615
TU1192792 lncRNA upstream 72237 20010820 ~ 20011105 (-) True G1046630
TU1193252 lncRNA upstream 123931 20062514 ~ 20086968 (-) True G1047041
TU1193390 lncRNA upstream 320278 20258861 ~ 20259396 (-) True G1047175
TU1193404 lncRNA upstream 431567 20370150 ~ 20373667 (-) True G1047188
XM_021626098.2 mRNA downstream 149824 19746311 ~ 19747504 (-) True LOC110539128
XM_021622956.2 mRNA downstream 291244 19580903 ~ 19606084 (-) True LOC110537146
XM_021622954.2 mRNA downstream 291245 19580903 ~ 19606083 (-) False LOC110537146
XM_021622971.2 mRNA upstream 2923 19941506 ~ 19978680 (-) False LOC110537153
XM_021622972.2 mRNA upstream 2923 19941506 ~ 19978680 (-) True LOC110537153
XM_036937170.1 mRNA upstream 435752 20374335 ~ 20482280 (-) False LOC110536815
XM_036937172.1 mRNA upstream 435752 20374335 ~ 20482280 (-) False LOC110536815
XM_036937171.1 mRNA upstream 435752 20374335 ~ 20487546 (-) False LOC110536815
TU1192375 other downstream 338659 19556278 ~ 19558669 (-) True LOC110537144
TU1191233 other downstream 992222 18859862 ~ 18905106 (-) False LOC110537130
TU1191234 other downstream 1029269 18859862 ~ 18868059 (-) True LOC110537130
TU1191128 other downstream 1081934 18813902 ~ 18815394 (-) True G1045201
TU1190787 other downstream 1450077 18446681 ~ 18447251 (-) True LOC110537121
TU1193559 other upstream 556982 20495565 ~ 20496428 (-) True G1047325
TU1193449 other upstream 571033 20509616 ~ 20599427 (-) True LOC110537156
TU1193723 other upstream 762957 20701540 ~ 20702040 (-) True G1047473
TU1193905 other upstream 924009 20862592 ~ 20866081 (-) True LOC110537162
TU1193952 other upstream 995378 20933961 ~ 20936901 (-) True LOC110537166

Expression Profile