RNA id: XM_036937162.1


Basic Information

Item Value
RNA id XM_036937162.1
length 3495
RNA type mRNA
GC content 0.49
exon number 13
gene id LOC110537156
representative False

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 20488123 ~ 20599476 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATATAGGGCGATGCGGAAGTCATAGTTCCGTTAACTTCAGTTGATTCCGTTTAGTCTGAAATTTGTGGTAGCGGTAGAACAGTCACACGCTTTCACATCGCAACACCTCGACTGAACCGTCTGTGCCTCATCCACAAAAAGGAGAATCATGAACAGCAACTACAGCGTCTCCCTGGGTGGCCCCGCCCCCTGGGGCTTCAGACTGCAGGGAGGAAAGGACTTCTGTCTGCCACTCACTATCTCAcggCTGACCGATGGGGGCAAAGCAGCCAAAGCCAAAATGAGTGTGGGAGATGTAGTTCTGTCTATCGACGGAATCGCCACCAAAGGCATGAACCACCTGGAGGCCCAGAACAAGATCAAAGCCTGCACTGACAACCTCAACCTCACCCTGCAGAAAGCTTCCAGTGTTCCCAAGGCTGATACACCAAAGGACGAGCCACTGGAGATCATTAAGCCTGTGCCAATCACCCATCCAGCTCCGCCCTTCACCAGCCCCTCCCCCCAACCCGGTGCTGCCTACAACAAGACGGCCCGCCCCTTTGGCGGGGGCAGCAATGTGGGTGCAGTCACTTCCTCCCTGACCGCCCCAAAGGTGGCCTCCATCCCCTCTGCATCGTCTGCTTTCACCCCTGCCGCCCCCTCCTCCCAGCAGCCCCAGCCTCCCTTCCCACTAGCTAGCCGCTCCCGCTCCCCAGCCCCACCTAGCTCGGCCCCACCCCCCAGACCCGGCTCTGGCCGTTCCCCCTTCaccaccccctcctccactccctcctcttcttcctcatcctccccgGCCAGAGTGACAGCCCCCTCCTCCAATCCCGGTGCTCCACAGTCCTCTTGCTATAACACGCCAATAAACCTGTACTCCAATGCCAATGCCTGTGAGGTGGCCATAGGACAAAGGCGGGGCCTGTTGGAAGCCCAGGGTGTGGTGGTCGACCAGATCAAAGAACAGTTTAATGGGAACAGAGTTGAACCAGAGTTGACCCACGCCTCGCCCCTCAGCGAGGCCAGTAAGAAGCGTCTGATCGAGGACACAGAGGACTGGCATCCTCGCACCGGAACCTCCCAATCCAGGTCCTTCAGAATCCTGGCTCAGATCACCGGCACAGAGAAAGACCAAGCCCAGGAGAACAGCGCTGGAAAGAATAAAGTTGTTGAGAATGCCCCGCCCAGTGGTCACATCACAGCATCAGTGAAGACCATGACCAAAGTCCCAGGAGCCCCCAGGAATGGCAGcagtgtcccgccacccaccttCAAGACCCCGTCTGCCCAGGTCAAACACTCCTGGCCAGCTGGAGGTTCAGCAGGTTTCTCTAAGGGTGGCGCTGCGCCCTCTTTTGGGAGGGTCAGCAACACTGCACCAGTACCCACAGTACCCAAAGTTTCTGACCGCCCTGCCCCCCAGGCGCACCCTAAGGACCAGAACTCCCTGGTACAGCGGGCCGAACACATCGCAGCGGGAACACGCACCCCCATGTGTGGCCACTGTGACAAGGTCATCAGAGGTCCTTTCCTGGTGGCCATGGGCATGTCCTGGCACCCTGAGGAGTTTAACTGTTCCCACTGCCACATGTCTCTGGTGGAGTCTGGCTTcgtggaggagaggggaacagTGTACTGTGCTCACTGCTATGAGAAGTTCTTTGCCCCTACCTGCACCAGCTGCCAGCAGAAGGTCCTGGGGGAAGTCATCAATGCCCTGAAGCAGACATGGCATGTGTACTGCTTCCTGTGTGCGTCCTGCCAGCAGCCAATCGGAAACAACACCTTCCACCTGGAGGACGGGCTGCCATACTGTgaaagagACTACTATCAACTCTTTGGTACCAGTTGCCATGGTTGCGACTTTCCCATCGAGGCAGGAGACAAGTTTCTGGAGGCGTTGGGATTCACCTGGCATGATACCTGCTTCGtgtgtgcaGTCTGCAACACCAGTTTGGAGGGCCAAGCCTTCTTCTCTAAAAAGGACAAGGCTCTGTGCAAGAAACACGCCAATACAGTCTAGATCTGACCCACCATCAGGAGTGAAGAACAGAGTTGTTGATATTTTTGGTAGTTTTAAAAGATTGATTTACTGATTATGACTTTTATTAACATATGTTTGGTTATAGGGAGTTAAGCTTTATTTCATATTCTCtgatgtatatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgtctgtgtgtgtctgtgtgtgtctgtgtgtgtgtgtgttttttgtgtgagtgtgtgtgtgtgtgtgtgttttttgtgtgagtgtgtgtgtgtatggctgtgtgtgttgtttaCCATTCACTGCTTGTGCCATATAAAAAGGGGAAAATATTTTGCTAAAATGAAGGTATGAAAAAGTACCTAGTGTATTTTCTACCGAGATTCATTAGATATTTGAAGATTTGTTGAAGTCAGACAAAGTGCATGATGGGAGAAAGTATGTTGACATGAAGGGAGGTATGATTTTTCATGAAATATCTGATTGAAATGTTctttacatacagtacaagaaTATCCTGTAGTTAGGTGAACACGTAAGGTAGTGATACTCAAGTAACAGCCCGGGGCCATATCTGGCTCATCATGACAAATGTCATGATGAGCCAGATATGGCCCCGGGCTGCTACTTGAGTATCACTACCTTACGTGTTCACCTAACTACAGGATATTCTTGAAGCCCTCAACATGAATTTATTTCATAAATGAAAATCCACTACATATGATACCTTAGCATGTATGTAGTTAGTCTAATTAAAGTCTTATTTTAGTATATAATGGGGACCTTATCAAATTAACATTAATCAGTGGACATATTCAAATCAATTATCACCTTATTGAAAAATAATGTGTTGTTGAGAACAactaggcccccccccccccccctctccactcatctgtctctgtctgtctctctctctgctggtctGTTTGAATCTGTAGACAGATCTGTATTTATCCTGGTAGTATATTTATTGGGGCTGGAGGGACGTAGGAATGTACTGTATTTTGGGCTTTCTAGGGTCAGTTGCACATAGAGTGGTTTACTGACAAAGTCAGACGGTCAGGACAGACAGCTGTTATTTTATTAGCAGTAGGGTTTTTCTGAGTTTATTGTTGTATTGATTTTTCAAAGTATTTTTATGGATTACATTTCCATACATTTTTAACCTAAACTTAGACACCATTTTGCTTTTGCTGCCACTGATGAATGCTTGCCTGTGTGGTGTTTATTGGTGTAATTCATTCCATTACCAATCGTATTTTCCACAATGTTACTCATCCAAACTACATAATAAAAAATGTTACCATTTTTCTCTACATCTCTACAATGTCAGTGTTATTGTGATTTGTATTAGACCTTTGTGGGAAGAACACCATTTTATTGAGAAATACAGTACATCAATCCAAGTGTATTGGTCTtctatttgtaaaaaataaaactaCAATTTCATATAAAGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1193541 lncRNA downstream 18533 20468708 ~ 20469590 (-) True G1047308
TU1193538 lncRNA downstream 23217 20464687 ~ 20464906 (-) True G1047305
TU1193517 lncRNA downstream 53486 20433651 ~ 20434637 (-) True G1047284
TU1193404 lncRNA downstream 114456 20370150 ~ 20373667 (-) True G1047188
TU1193390 lncRNA downstream 228727 20258861 ~ 20259396 (-) True G1047175
TU1193610 lncRNA upstream 37667 20637143 ~ 20637401 (-) True G1047368
TU1193618 lncRNA upstream 49481 20648957 ~ 20649290 (-) True G1047376
TU1193629 lncRNA upstream 60914 20660390 ~ 20660606 (-) True G1047387
TU1193656 lncRNA upstream 68008 20667484 ~ 20668882 (-) True G1047410
TU1193657 lncRNA upstream 71174 20670650 ~ 20670849 (-) True G1047411
XM_036937169.1 mRNA downstream 574 20374335 ~ 20487549 (-) True LOC110536815
XM_036937171.1 mRNA downstream 577 20374335 ~ 20487546 (-) False LOC110536815
XM_036937170.1 mRNA downstream 5843 20374335 ~ 20482280 (-) False LOC110536815
XM_036937172.1 mRNA downstream 5843 20374335 ~ 20482280 (-) False LOC110536815
XM_021622972.2 mRNA downstream 509443 19941506 ~ 19978680 (-) True LOC110537153
XM_036939493.1 mRNA upstream 8497 20607973 ~ 20638681 (-) True LOC110537157
XM_036937173.1 mRNA upstream 190379 20789855 ~ 20797910 (-) False LOC110537159
XR_005034904.1 mRNA upstream 190379 20789855 ~ 20797912 (-) False LOC110537159
XR_005034905.1 mRNA upstream 190379 20789855 ~ 20797912 (-) False LOC110537159
XR_005034906.1 mRNA upstream 190379 20789855 ~ 20797912 (-) False LOC110537159
TU1192719 other downstream 549618 19913839 ~ 19938505 (-) True LOC110536814
TU1192375 other downstream 929454 19556278 ~ 19558669 (-) True LOC110537144
TU1191233 other downstream 1583017 18859862 ~ 18905106 (-) False LOC110537130
TU1191234 other downstream 1620064 18859862 ~ 18868059 (-) True LOC110537130
TU1191128 other downstream 1672729 18813902 ~ 18815394 (-) True G1045201
TU1193723 other upstream 102064 20701540 ~ 20702040 (-) True G1047473
TU1193905 other upstream 263116 20862592 ~ 20866081 (-) True LOC110537162
TU1193952 other upstream 334485 20933961 ~ 20936901 (-) True LOC110537166
TU1195341 other upstream 1185715 21785191 ~ 21785557 (-) True G1048931
TU1195401 other upstream 1290062 21889538 ~ 21889869 (-) True G1048983

Expression Profile