RNA id: XM_036939493.1


Basic Information

Item Value
RNA id XM_036939493.1
length 1731
RNA type mRNA
GC content 0.54
exon number 10
gene id LOC110537157
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 20607973 ~ 20638681 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGGCTGAGGTGAGAGGAAAAGCAGGGCAGTTGATTCCTGTAGCTTTGGGTGATTATCATCAGAGCATTTGAACAAACGTCAGGCTCCTCCTAACCCagggattagagagagagagagagagagagagagagagagagagagagagaggctggggtcTAGAACCTCATATACACATTTAAACCTTCAGCCTGTCTGCGTTTTCCAACACTTCCTATACATGCTGCACAGCCAAAGTCAATCTCCACCAGTCCATACTAACAGAGtcaacaggaggaggagggcaccACTGGAGCAACAGacaTGTCAGGCATGGACAACATGGACCGAGGTTTTTTCCGGAAGGTAGACGTGCCAGACCAAGCTCATTACATCGTGGCCTGCTTCGTTGTGGTGATCGGAGCAGTGGGGGTCGGTGGGAATGCCCTGGTGATGTACGCCTTCTTCAGTAACAAGAAGCTCCGGACTCCTCCCAACTATTTCATCATGAATCTGGCAGTGAGTGACTTCCTCATGGCCATCACACAGTCCCCTATCTTCTTTGTCAACTGTCTCTACAAGGAGTGGGTTTTTGGAGAAACAGGCTGTAAGATGTACGCCTTCTGTGGGGCCTTATTTGGGATCACCTCCATGATCAACCTGTTGGCTATCTCCATTGACCGCTACATCGTCATCACCAAGCCCCTACAGGCCCTCCACTGGACCTCTAAACGCCGCACCTCCGTTGTCATCGTCATTGTCTGGCTCTACTCGCTGGCCTGGAGCCTGGCGCCTCTCTTTGGCTGGAGTTCTTATATCCCTGAGGGCCTGATGACCTCCTGTACGTGGGATTATGTGACCTCCACACCAGCCAATAGGAGTTATACTCTCATGCTATGCATCTTTGTGTTCTTCATCCCACTGGGCATCATCTCCTACTGCTACCTCTGCATGTTCCTGGCCATACGCACTGCCAGTAGAGACATGGAGAAACTGGGCAGTCAGGTGAGGAAGTCCACCCTCATCCAGCAGCAGTCCATCAAGACAGAGTGGAAGCTGGCCAAGATCGCCTTTGTGGTCATCATCGTCTATGTGATGTCCTGGTCTCCCTACGCCAGCGTCACCCTCATCGCCTGGGCTGGCTATGGACGTGCCCTCAGCCCCTACTCCAAGGCCGTCCCTGCTGTCATTGCCAAAGCCTCAGCCATCTATAACCCTTTCATCTATGCCATCATCCACTCTAAGTACAGAGACACTCTGGCAGAGAAAGTTCCCTGTCTGCACTTTCTGGCCCAACCCCTCAGGAAGGGCTGTATCTCTATGTCCAACAGCGAGTCCTCCTTCAGGGACCCTATGCTCAGCAGACAGTCCTCCACCTCCAAGACCAAGTTTCATAAAGTGTCCTCCATGTCCACCGGAGACACACAGGTGTGGAGTGACGTGGAGCTGGACCCCTACGACCAGCAGAGCCAGTCTCTGAGAATCAGCCACTCCTCTGGAGCTCTGAGAGTGAAGGAGTGTAGACAGTCAGCCCAGCAGCAGGCAGAAAAAGGTAAGGCTGCTGTCCTCAAGAGCAGCTGTGACCACGACCTAGTGTCTGAATCTGTGACCAGGGAGGAGGCTGGGGAGGGgtggcaggaggaggagaagacccAGGAGATAGCCCCCCCAGTCAGctcaggaggaggtggaggagccaCCCCCCTGCCGCCCCACCACCAGCCTCCTCACCCCCCAGGTCCCCCAGCACCctga

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007601 visual perception biological_process
GO:0007602 phototransduction biological_process
GO:0018298 protein-chromophore linkage biological_process
GO:0016021 integral component of membrane cellular_component
GO:0009881 photoreceptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG:

id description
K04255 OPN4, Rh2_7; r-opsin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1193584 lncRNA downstream 45973 20561218 ~ 20562000 (-) True G1047344
TU1193583 lncRNA downstream 51720 20555864 ~ 20556253 (-) True G1047343
TU1193562 lncRNA downstream 96207 20510715 ~ 20511766 (-) False G1047327
TU1193563 lncRNA downstream 96207 20511093 ~ 20511766 (-) True G1047327
TU1193541 lncRNA downstream 138383 20468708 ~ 20469590 (-) True G1047308
TU1193618 lncRNA upstream 10276 20648957 ~ 20649290 (-) True G1047376
TU1193629 lncRNA upstream 21709 20660390 ~ 20660606 (-) True G1047387
TU1193656 lncRNA upstream 28803 20667484 ~ 20668882 (-) True G1047410
TU1193657 lncRNA upstream 31969 20670650 ~ 20670849 (-) True G1047411
TU1193658 lncRNA upstream 32268 20670949 ~ 20671173 (-) True G1047412
XM_036937161.1 mRNA downstream 8497 20488123 ~ 20599476 (-) False LOC110537156
XM_036937162.1 mRNA downstream 8497 20488123 ~ 20599476 (-) False LOC110537156
XM_036937163.1 mRNA downstream 8497 20488123 ~ 20599476 (-) False LOC110537156
XM_036937164.1 mRNA downstream 8497 20488123 ~ 20599476 (-) False LOC110537156
XM_036937165.1 mRNA downstream 8497 20488123 ~ 20599476 (-) False LOC110537156
XM_036937173.1 mRNA upstream 151174 20789855 ~ 20797910 (-) False LOC110537159
XR_005034904.1 mRNA upstream 151174 20789855 ~ 20797912 (-) False LOC110537159
XR_005034905.1 mRNA upstream 151174 20789855 ~ 20797912 (-) False LOC110537159
XR_005034906.1 mRNA upstream 151174 20789855 ~ 20797912 (-) False LOC110537159
XR_005034907.1 mRNA upstream 151174 20789855 ~ 20797912 (-) False LOC110537159
TU1193449 other downstream 8546 20509616 ~ 20599427 (-) True LOC110537156
TU1193559 other downstream 111545 20495565 ~ 20496428 (-) True G1047325
TU1192719 other downstream 669468 19913839 ~ 19938505 (-) True LOC110536814
TU1192375 other downstream 1049304 19556278 ~ 19558669 (-) True LOC110537144
TU1191233 other downstream 1702867 18859862 ~ 18905106 (-) False LOC110537130
TU1193723 other upstream 62859 20701540 ~ 20702040 (-) True G1047473
TU1193905 other upstream 223911 20862592 ~ 20866081 (-) True LOC110537162
TU1193952 other upstream 295280 20933961 ~ 20936901 (-) True LOC110537166
TU1195341 other upstream 1146510 21785191 ~ 21785557 (-) True G1048931
TU1195401 other upstream 1250857 21889538 ~ 21889869 (-) True G1048983

Expression Profile