RNA id: XR_005034904.1


Basic Information

Item Value
RNA id XR_005034904.1
length 2915
RNA type mRNA
GC content 0.48
exon number 11
gene id LOC110537159
representative False

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 20789855 ~ 20797912 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCCTCTCACAACCATTCTTCACTCCACAATTAGTTTTACGAGATTTACGCATCTCGAATACACCAAGGATGGTTGACTGGAATGTGGACCGCCAAGGCTGGGAAAAAAAGATCAGGACTACGAGCACGAGTCTGTGAAGACCCCCTGCAGTACCTGCATACATTGGCAAAAGGATTGTCTACAACGGaatgtacagcaccagtcaagtTGTCTACGTACCCCTTGGGAGCCACGGACCCCTGATTGAATACCCTGTTCCATATAAAAGATACATGCGTACAACGATGCGTACAATGATGTATAGTAGCTAAGTACTGACAGAAACATGGAGGAAGTCATGAGCAGGCTGCAGACATTGAGTGCAGATCAACTACGGCAGGAGATTATCGGGGCAGGGCTGAAGTGTGGCCCCCTTACCCCCACTACAAGAGCCATCTTTGAGAGGAAGCTGGCCAGAGCCCTCCTGGAGAAGCAagggggggatggaggggtgACTGATAGAGGTAGCTCCTCCAATACAGAGTCTAATGGACCCACAACAAACAGAGTAGAAACTACCCCACAATCTGGAACTCAAGTCATCAGCAGAGGAGGGTAAAGAGAAAAAGGAATTGGATGAACCAGAATATCCCCTTGTTTACTATGGTGTATGTCCTCATTGGGAGGAGTCAGTGGTAGCCGATGGTAAGACCTCTTTTTGTACTAGACAAAGTTAATGTATATGTGGACTGGAAGAAAGCTCTGAGAGCAATGATGACCATGAAAGGGTCCAGGTTTAAGCCCTTTTCAACACGAGAGGAAGCTGAGAAATTCTCAAAATGCATCAACAACAATAGCCCTTCAGCCAGCGCTGAGGAACGCTGTGGAGAAGGGGGACAAGGAAGCCTTCAGCAGGCTGGTCTGGGCCAACCCACGCTACCTCATCGGATCTGGAGACAACCCCACCATGAAGGGTGCCAATACAGTGTCCTGCATGTGGCGGCCAAAGAGAACCAGTCGGAGATGGTCCAGCTCCTCCTGGACACTCTGGAGAGTCCAGACTTCATGAGACCTATGTATCCTGATGACCAGGAGGCCATGTTACACCAACGCATCTGCTACCTCGTTGACCTGTACCTCAACACACCTGACAAAGCAAGCAATGAAACTCCTCTTCACTTTGCCTGTAAGTTTGGATGTCCAGATGTGGTCAATGTGCTGTGTTGTCATCCTGCTACTGACAAACAGTGGCAGAACAAGTACAACCAGAAGCCCTCTCATGTGATATGCGAGAGGAAAAACAAAACCCCTGTCATAGAAAAGAAAATCAAGGAATATTTGAAGGGTGAGTTCCACAGACTATGGAGAGCTCCACCCAGGGATCGAGCAGTGTATTTCCACTGTATTCTCAAATCTGACCCTGTGTGGGGAGGGAGATTGCACATGACATGGCGCATCCTTGGGCAGAGTACTGAGACTTCCTGGATAGCTTCATTGACCTGTCTACAGAGGAGGGACTGAGGAGGTTGGAGGAGTATCTGGATAGGAAGGACCAGACTGAGCGTCCCCTAGAAGAATATGGGAAGACATAGCAGACTGGTGCTGGATTAAAAACATCAACCTCCTCCAAAGAGGAGCAGAGCCATGTCCTGATCAACAACACCCTGAATGACAGAACGTCTCCATCAAAGGAGAAACGTTCCCAGTCTCCTGTGTGTAAACTCCTGCCAGAGTTTGAGAAATCCAGCCTAAAGGATGGCTCTGTCCAAGTGGAGGACCAGGAGGAGGTAAAGAGTGTTGAGGGCCGTCTGGCTCCCTCTGTACCCAGGAAAGAGGGCCTGGACCTGGGGGATGACAGTTTCTGGAGGACCTGGGAGGGGAGTCAGGTGAAGAGGCAGGTGGAGTAGCTCTCCAACCCCAGCTCAGAGGATTATCTGACAGCAGACGAGGGCTCAGACTCTGAGTGCCCAGATAGTCCCCgagacaggagaagagaaagTAGAGGCTCAGGATCCTCTAGCGCATCTTACAAATCCATGAAGGGAGACGCTTCGAAAGAAACAATTCTGACAACCGACACCCCTACAAAACGAAGACAGGAACTGTTCATGGACGGAATTTTTCTTGCAGGGAATCTCCCACCAAGTTAGACAGTGAGGTCCTGTCTGCAATGAATAACATGGAGATTGACCCTGAGAGAAACCCCTGCATTACTAAGTGGAGGAACACCATTATGGCCTATCCCTCTTCACAGTGGCTAAGCAGGCTCAGCTTCTGCAGCCCAGGCCCGCACACTCCTGCTCAGAGCTGTTGCACCCAGACCATCCTCTGCAGGACCCTCTTCCACTCCCCAAACTGGCACAGGGAAACCACAAGAAAACAGGATGTCACGTCCCAGGATCTGAAGGTGGTGTTGCACATACAAAAGGGAAAGTTGGCCAACATCCTGCACCACCACAGCAGGTCCATAGTCTAACAACTGACTTTATAACCCAGGCAGTCCTTATTTTACCCGTGTGCTGATTTCCATTTGTACAACTCTTTTGGCTGTTCTATGCAAGGCACTGCTCCACTTAACACTATTACCTTATCAGGTAGCTATTCAACAGCACTAATGCTGCCTGCCTACATGCATGTCCTCAATGCAAGCATTCTCTTCTGGCGGATAGCATAGCTACAGATTACACATTCAACTTGAAGTTACCTAATGGTGTACACTTTTCCCAGTGcctatgtaatgtgtgtgtatacaagATGCTTTATACATTAAATGTTCAAATAATGCTTTTGTATTGTTAATCACTGTTACCTTATTCCAGAGATACATTTGGAGAgttttaaattgttttaattTATACCTATACACAAGAAGAATGATTATGGCTGTATTCAGATAACCGTTTATTCATAAAATGTAATAAGCATGATCAAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1193785 lncRNA downstream 329 20789274 ~ 20789526 (-) True G1047534
TU1193778 lncRNA downstream 7048 20782603 ~ 20782807 (-) True G1047527
TU1193775 lncRNA downstream 8105 20781512 ~ 20781750 (-) True G1047524
TU1193771 lncRNA downstream 11639 20777904 ~ 20778216 (-) True G1047520
TU1193760 lncRNA downstream 31096 20758533 ~ 20758759 (-) True G1047509
TU1193913 lncRNA upstream 6146 20804058 ~ 20830715 (-) True G1047646
TU1193928 lncRNA upstream 28557 20826469 ~ 20827603 (-) True G1047660
TU1194055 lncRNA upstream 194402 20992314 ~ 20992528 (-) True G1047758
TU1194065 lncRNA upstream 200417 20998329 ~ 20998830 (-) True G1047768
TU1194072 lncRNA upstream 207542 21005454 ~ 21005676 (-) True G1047775
XM_036939493.1 mRNA downstream 151174 20607973 ~ 20638681 (-) True LOC110537157
XM_036937164.1 mRNA downstream 190379 20488123 ~ 20599476 (-) False LOC110537156
NM_001165092.2 mRNA upstream 56914 20854826 ~ 20857785 (-) True gltp
XM_021622985.2 mRNA upstream 64646 20862558 ~ 20888979 (-) False LOC110537162
XM_021622986.2 mRNA upstream 64646 20862558 ~ 20888979 (-) False LOC110537162
XM_021622990.2 mRNA upstream 64646 20862558 ~ 20888979 (-) False LOC110537162
XM_036937175.1 mRNA upstream 64646 20862558 ~ 20888979 (-) False LOC110537162
TU1193723 other downstream 87815 20701540 ~ 20702040 (-) True G1047473
TU1193449 other downstream 190428 20509616 ~ 20599427 (-) True LOC110537156
TU1193559 other downstream 293427 20495565 ~ 20496428 (-) True G1047325
TU1192719 other downstream 851350 19913839 ~ 19938505 (-) True LOC110536814
TU1192375 other downstream 1231186 19556278 ~ 19558669 (-) True LOC110537144
TU1193905 other upstream 64680 20862592 ~ 20866081 (-) True LOC110537162
TU1193952 other upstream 136049 20933961 ~ 20936901 (-) True LOC110537166
TU1195341 other upstream 987279 21785191 ~ 21785557 (-) True G1048931
TU1195401 other upstream 1091626 21889538 ~ 21889869 (-) True G1048983
TU1195432 other upstream 1133271 21931183 ~ 21931785 (-) True G1049013

Expression Profile