RNA id: XR_005034909.1


Basic Information

Item Value
RNA id XR_005034909.1
length 1631
RNA type mRNA
GC content 0.35
exon number 3
gene id LOC118937641
representative False

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 20796080 ~ 20801052 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctccacaaggagactgactgcctgttacacgaatgcagtagagccaagACTCGTGCTCGTAGTCCTGATCTTTTTTTCCCAGCCTTGGCGGTCCACATTCCAGTCAACCATCCTTGGTGTATTCGAGATGCGTAAATCTCGTAAAACTAATTGTGGAGTGAAGAATGGTTGTGAGAGGCAATGTAAACCAGCAGGTGGCAATGCCAGAAGAGGGGGGATTAAACAACATAATCAAGATGATGATTTTTCACTGCTTCATCAAGAAttaattgaaaacaaaatgttctGTTTATATAAAGCatttaagctgtgtgtgtgtgtgtgtgttaaatctTGCTAGCTAGAGGAACATTTAACCCCTTTTGTCTGACAGAATTATAGCTCTATTTGATTTTCTCAATCTCTTTATACAGAATTTCACTTCATTGTAGAATTTCATTTTTAGTGGGAGACTAGAAAATCTTATGATTTACTGTACATTAGGAAGAATGACTAGTTTGCCAATATAATATGGATATATTTTACATACTATATTGTAAACATGCTGACATACAGTACTGCTGCAGAATATTTTTGAGTGAAAGGGGAGAATTAACATCCTGCAAAATGACTGTTTGAGAATGGTAATCTAATCTAAATTTAAACATAGCTAAACACGTTCAGATGAGTGACTGTCCTTTGAGTTTTGCCGTTGAAATTCACTTAATGCTCTCTCTTCCTGGTTGTGGTTAATTGCTTCATCAAAGAGATTCTGCCTTGGAAAGTCATTATTTTCTAATGAAACATCAAATAGAGGAGATCATTTTAAAAAAGGAAACTGAAATTAGAGGAATATAACCACATTGTGGATTGATTCTACAAAGTGATTTTAAAACTTAAGAGTACATTTTCTATTTCTAATTAGGCTGGTCATACACTATCATTATCATCATGCTGATGTGGGGCTCTTTTTCTGTGTCTATCTATAGAACCATTTCAGACTTTGAGAATATATTGCAATGAGGGTGTATTATTCCCTGTCTATGATTGACGAATGAAACTTGCAGTACTATCAGTAAGAACTGCAAAAGATGGTTTAACACATTAAGTAAGCCTAAAAGAATGAGTACATTATCTTTTAGCTGAAGAAAATGTTCTGTATTACTGTAAAACATTCATATGCATAAGGAGTCCTGATAGACTAAAGGCAGAGGGGCCCTTTCCAAATGATTCTTCTGTCACAAGCTCAAGGGGATGAAAGTCATTTCCCTTTGATCGATTAGCTAATTTATGAATTAATTAGTGTGTTTTGCATTGTTTAAGTCTGGCAGCAACAACCGTTACtgggaggacatttctccatgtaTTTTATATCATATAAGACAAGGGGTTGGCATGGTAACCTCATTTACCATTCAAAGCCCTTATTCATATTGAAGAATGGCACTCATGGGTATTGTCAAGACATGATTCAATATTCTTCATAAAAGCCGCTGTACGTTCGAATGGTTTCGATTTTTGTCTTAAAGAATACAGATGTCTAATTAACTTTAGGGCACAAATAAAGTTCAGATTTTaagtttgtatttttttattcaaaGGCTAATACATTTATTGGCTCACACTGTTTAAAATATCCACTGAGGTGAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1193791 lncRNA upstream 1765 20794082 ~ 20794349 (+) True G1047540
TU1193790 lncRNA upstream 2184 20793083 ~ 20793930 (+) True G1047539
TU1193789 lncRNA upstream 3203 20792643 ~ 20792911 (+) True G1047538
TU1193786 lncRNA upstream 5580 20789893 ~ 20790534 (+) True G1047535
TU1193770 lncRNA upstream 17893 20777973 ~ 20778221 (+) True G1047519
TU1193823 lncRNA downstream 25988 20827040 ~ 20827498 (+) True G1047565
TU1193842 lncRNA downstream 57765 20858817 ~ 20871751 (+) True G1047583
TU1193851 lncRNA downstream 131519 20932571 ~ 20933858 (+) True LOC110537167
TU1194041 lncRNA downstream 180383 20981435 ~ 20981921 (+) True G1047744
TU1194054 lncRNA downstream 191105 20992157 ~ 20992457 (+) True G1047757
XM_021622982.2 mRNA upstream 102153 20667957 ~ 20693961 (+) False LOC110537158
XM_036937158.1 mRNA upstream 425571 20107346 ~ 20370543 (+) False LOC110537154
XM_036937159.1 mRNA upstream 425571 20107346 ~ 20370543 (+) False LOC110537154
XM_036937160.1 mRNA upstream 425571 20107346 ~ 20370543 (+) True LOC110537154
XM_036939491.1 mRNA upstream 769945 20021037 ~ 20026169 (+) True LOC118937812
XM_021622983.2 mRNA downstream 2973 20804025 ~ 20846262 (+) False LOC110537160
XM_021622984.2 mRNA downstream 2973 20804025 ~ 20846262 (+) True LOC110537160
XM_021622992.2 mRNA downstream 90936 20891988 ~ 20912792 (+) True LOC110537163
XM_036937180.1 mRNA downstream 131484 20932536 ~ 20933866 (+) False LOC110537167
XM_021623005.2 mRNA downstream 160451 20961503 ~ 20964467 (+) True LOC110537168
TU1193645 other upstream 104372 20690827 ~ 20691742 (+) False LOC110537158
TU1193644 other upstream 104845 20690827 ~ 20691269 (+) False LOC110537158
TU1193125 other upstream 284595 20509269 ~ 20511519 (+) True G1046929
TU1193001 other upstream 502263 20282886 ~ 20293851 (+) True G1046823
TU1192894 other upstream 648700 20144179 ~ 20147414 (+) True G1046724
TU1194759 other downstream 1032042 21833094 ~ 21834812 (+) True G1048417
TU1195985 other downstream 1724889 22525941 ~ 22526232 (+) True G1049502
TU1196129 other downstream 1927878 22728930 ~ 22737666 (+) True G1049629
TU1198209 other downstream 3376378 24177430 ~ 24177934 (+) True G1051534
TU1199317 other downstream 4551532 25352584 ~ 25356008 (+) False LOC110537258

Expression Profile