RNA id: XM_021622985.2


Basic Information

Item Value
RNA id XM_021622985.2
length 3795
RNA type mRNA
GC content 0.47
exon number 21
gene id LOC110537162
representative False

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 20862558 ~ 20888980 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAGTCCGTCAATAATCCTCAAAGAAGAAGAAGCTAAATAAACTAACGTTAGACAGTTAGCATTTTCCTCATCAAATTTTCTGACCTCGTCGTTGTACAGTAGTGTAAACTGTCTCATGAGTGTCTGTCTGAAACGGAGTGTTTAAAGGACTTTCTGTATACAAACAACTAGTTTGCTACCTAAAGTAAAAAGGGATGTCAAAGCGGCTGCGGAGCAGAGAGGTCTGCGCTGATTGTAGCTCCCAGGGCCCGTGCTGGGCCTCAGTGAACAGGGGCGTGCTGATCTGTGATGAGTGCTGCAGCATCCACCGGGGTCTGGGCCGACACAGTTCCCAAGTCCGACACCTGACTCATACACCATGGCCACCCTCCCAGCTACAGATGGTTCAGAAATTGTACAGCAATGGGGCCAACTCTATCTGGGAGCACAGCCTTCTGGACCCCTCGTCTATCACGAGTGGGAAACGCAAGGCCAACCCCCAGGACAGAGTCCATCCCCATAAAACTGAATTCATCAAGGCCAAATATCAGATGCTGGCGTATGTCCATCGAATGCCCTGTCGAGAGGATGACAGTGTCACCACAAAGGACCTCAGTAAGCAACTCCACTCCAGTGTTCGGACTGGGAACCTGGAGACGTGCTTGAGACTGTTGTCTTTGGGAGCCCAGGCCAACTTCTTCCACCCGGAAAAAGGAAACAGTCCACTGCATGTAGCAGCTAAGGCATGTCAGGTGTCACAAGCAGAGCTGCTGGCTGTGTATGGGGCGGATCCTGGTGCCCTAGACACAGGGGGTAAGACCCCTGTTGACTACGCAAGACAAGCAGGCCACCAGGAGCTGgcagacagactggtagagatcCAGTATGAACTCACAGACCGCCTGGCATTTTACCTCTGTGGGAGAAGGCCAGATCATAGGAATGGACAGCACTTCATAATCCCACAAATGGCTGACAGAAATGTCAGTCTGGATTTGTCAGAATTTGCAAAAGCTGCAAAAAAAAAACTCCAGTCTCTCACTAACCATCAGTTTGAAGAGCTTGCCATGGACGTTTATGATGAAGTGGACAGAAGAGAAACTGATGCAGTGTGGCTCGTGACTCAGAACCACAGCACTCTGGTAACAGATACAACTTTGGTGCCTTTCCTCCCTGTCAACCCCGAATACTCATCCACCAGGAACCAGGGCAGACAGAAGCTAGCAAGGTTCAATGCACATGAATTTGCAACACTCGTCATTGATATTTTAACTGATGCCAAACGTCGGCAACGGGGGAACTCCTGTGAAAGTCCCAGAGagGACATAGAGCTCATCCTGAAGGGAATCGGCAGCCGTCATGGGAGTGATAACCAGGATAATGAAGACCAACCAGATTATGACAGTGTGGCGTCAGATGAAGATCCAGAGCGGGAACCCGCCTCTGGGAAGAATGGGAAAGATGACAGGACCAAGAGCTCGGAGTCGTCTGACCTGTCTGATGGACCCATCACAGTACAGGAGTTCATGGAGGTGAAGAGCGCCCTCACAGCCTCCGAGGCCAAGATACAGCAGCTGCTCAAGGTCAACTGTCACCTGAGTGAGGAGATCCGGATGATGCAGAGCAAGCTGAACTCCCTGCAGACTGAGAACTCAACCCTGCAATGGCAGGCCCCCAGGGGCTCGCAACACCCTCCGGACCCCTCTGGCCACCCCCCTGTCCACGGAGGCCGCCCCATGTCCATGTACGAGACAGGCTCGGGCATGAGGCAGTACCCCCACAGGGGTGACCCTCCTTGCCGTGCCGACGGCCTCACCATACAGCCCCTCCCTACAAACATTGGGAGGGGTCCTTTGGGGACcgcctcatcctccctccctaccttcccctcctccctgtcctggtCGCGGGATGAAAGAGCTCGAAGGGGTTGCAGCCTAGAGGGACAGAGCATGCTGGAGAGTGACTATGACAACACACCAAACCACTCCGGACCGGAGGAGTCTGGTCTGAGCAGGAACAGCAGTTGGCTGGGGGACGGCAGTACATCAGATCAGGGGgaggatgagactgaggcagacTCCACCCTACCCTTCACCGAGGACGTCATCTGTAAGACCGAGCAGATCACCAAGAACATCCAGGAGCTGCTGAGGGCTGCACAGGAGAACAAACATGAGAGCTTTGTACCATGCTCAGAAAGGATCCATGTGGCTGTGAGGGAGATGGCCACTCTGTTTCCTAAGAGGCCGTACTCTGACACAGTGAGAGGGTCCCTGCGGCTGCTCACCTCCAGTGCCAGCCGGCTCCAGGGGGAGTGCCAGAAGGCCACGCCCCACGACCCTTGCCCCTCCGACATGCAGCTGGTCACGCAGCAGGTCATCCAGTGCGCCTACGACATTGCCAAGGCTGCCAAGCAACTCGTCACTGTGACAACCAAAGAAAACAGCAACTGATCTTTAACCCAAAGACTAACATCCCTCTTGGATATTTGAATATGTCATTATGGCTAATTTCAAGTTATCAATGTTGCGTTATGTTATTATTTGTATGCCtccatttttatttaaaatgCTTAATTGGTCATAGTAGATTTCTAGTGAAGAACGTTTACAGAAAATGTACCTTCTGAAACATGGGTCAACCCAGGGATTTGTCCATGGGTTTGTCTGTTAAATATACTAATATTGCTAGAGTGTGACGACCTGCCTCTCTGAGCTTACCTCATTGGAGACGTGCTAGTTACATTGAAGTTACTAAACAGTTTTGCAACGTTACGCATTTAAACATTTCTGTGGTTGCTGGGGTGCTTGTCCTTGATGCTCTTCCCTATGCACCAATGACACGTGACTGTCCAAAGGTTTCAAACAGCATTTTAAGCAGTTAGCTTTTAACTTCTTATTCAATGCCAAACACATTGGGATTTTGAACATAACTTAGTGGAATACTGCCTCATGAGTCATGATACGTCCATTACAAGGCTTTCGTCTAGGTATTTTCCATGAATGCCATTTCTATGTTTTATACTAAAGCCATAAAGGTGAGGACAACTGCCAAGCCAGTTTTCCATTGTTTCGTTTTTCTTTTTGTAGTTTGAGCAGAAGGTGAAGCCATACCTCTAATATACATGTACCTCATACACAGgcccaatatatatttttatttagtgtttaaaaaaatatataattaaatcTCTCCCAAAGGGATACTCAAAATGGCCAACCCCAATTCTATAATTTGTgttcttttttttaatgaaagAATGAAAATGTACAAACATATATTCTGAATTCATACAACCCTAATCTATATTATATTTATGAATACAATATCTCACACCTATctaacaaaatatttattttcataaaATGTATGTTTAACAGTTAAAGTCTCCTCATATATTCCGTGCTGTTTGAAGACATGCAAGAAGTTTTCATCTTGGTGGTATGTGTTTCCATATATATCCACCGGCAATAAGTTGTGCtcgtgatctctctctctttgtgtgtgtgtgtgggtgtggtgctAAACCCAGTCTATGCCTTTGTGTGTCCCATGCCTTGTATTGTCTTGATTATGCTGCTAATGGTCAAACATGTGCAACTAATATGGTGTTAAGATGTGTTAAAAGCATTGGTTCTGTATATGTAATATGGACTATTTTATATTAGTCATGTGTTGTCCAGGGATGTGGGAGTGATGATCAATTATGTGTGCCATTGAGTGTTATTATGAGCCCGACACAAGTCATAGTTATTGCCTTTGTGGTTTAAATACCTGCCTTTTTAAAGTAATAAACTTTACTTTATAACTCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1193913 lncRNA downstream 31843 20804058 ~ 20830715 (-) True G1047646
TU1193928 lncRNA downstream 34955 20826469 ~ 20827603 (-) True G1047660
TU1193898 lncRNA downstream 70944 20791224 ~ 20791614 (-) True LOC110537159
TU1193899 lncRNA downstream 72009 20790036 ~ 20790549 (-) False LOC110537159
TU1193785 lncRNA downstream 73032 20789274 ~ 20789526 (-) True G1047534
TU1194055 lncRNA upstream 103335 20992314 ~ 20992528 (-) True G1047758
TU1194065 lncRNA upstream 109350 20998329 ~ 20998830 (-) True G1047768
TU1194072 lncRNA upstream 116475 21005454 ~ 21005676 (-) True G1047775
TU1194202 lncRNA upstream 164919 21053898 ~ 21054693 (-) True G1047896
TU1194267 lncRNA upstream 238251 21127230 ~ 21127558 (-) True G1047961
NM_001165092.2 mRNA downstream 4773 20854826 ~ 20857785 (-) True gltp
XR_005034904.1 mRNA downstream 64646 20789855 ~ 20797912 (-) False LOC110537159
XM_036937176.1 mRNA upstream 21715 20910694 ~ 20911859 (-) False LOC118937642
XM_036937177.1 mRNA upstream 21715 20910694 ~ 20912332 (-) True LOC118937642
XM_021623003.2 mRNA upstream 44975 20933954 ~ 20937604 (-) False LOC110537166
XM_036937179.1 mRNA upstream 44975 20933954 ~ 20937625 (-) False LOC110537166
XM_021623001.2 mRNA upstream 44975 20933954 ~ 20938247 (-) False LOC110537166
TU1193723 other downstream 160518 20701540 ~ 20702040 (-) True G1047473
TU1193449 other downstream 263131 20509616 ~ 20599427 (-) True LOC110537156
TU1193559 other downstream 366130 20495565 ~ 20496428 (-) True G1047325
TU1192719 other downstream 924053 19913839 ~ 19938505 (-) True LOC110536814
TU1192375 other downstream 1303889 19556278 ~ 19558669 (-) True LOC110537144
TU1193952 other upstream 44982 20933961 ~ 20936901 (-) True LOC110537166
TU1195341 other upstream 896212 21785191 ~ 21785557 (-) True G1048931
TU1195401 other upstream 1000559 21889538 ~ 21889869 (-) True G1048983
TU1195432 other upstream 1042204 21931183 ~ 21931785 (-) True G1049013
TU1195415 other upstream 1048352 21937331 ~ 21938200 (-) True G1048996

Expression Profile