RNA id: XM_021622992.2


Basic Information

Item Value
RNA id XM_021622992.2
length 7084
RNA type mRNA
GC content 0.46
exon number 23
gene id LOC110537163
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 20891988 ~ 20912792 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gagggcgCGCGCGCTTGTACCTGCCTTCGTGTGTAGCTTACCTGCGTGCTTCCTTGCATCCTTTATCAATCATAGACTGTAAATACAGGCCATATCATCAAGATTGACTGTGTATTGCACCGTGTGGCGTGTGTTGCTTTAAAGGGGGCGTTCGGCCGCATATTCACAATCGGCCAGAGTGTAAACTGAAGAGAGGCTCATTTGAAGCAAATAGCTGTCTTTGTGCAATTGAATCAACAGCAACAGTGGGGCGCAATGGGAGAGGCCGAGACGCGCCATAAATTGCTGCGCAATGTGAAGAAAGAGgtgaaacagatcatggAAGAGGCAGTGACTCGGAAGTTTGTGCATGCAGACAGCAGCCATATAATATCCTTCTGTGCTGTAGTGGAGGCATGTGTGCTCCATGGGCTGAAGAGGCGAGCAGCGGGCCTCCTGTGCAGTAATAAGGTAGCAGCACTCTTCATGAAGGTGGGGAAGAGCTTCACCCCGGTGGAGGAACTGTGTCAAAAGGTCCAAGAACTAGAGCAGCTCATCGAGACCAAcagacAGGCTCAACTAAATAATGTCAGTGTTCCGAAACAACCCAGGGTGACCAACCTCCCCCCCCAGGGCTTGAGGAACCTGTGGATCCGCACTGCTCTCATGGAGAAGCTGCTGGACAAGATTGTCATGTACCTAGTGGAGAACAGCAGTACTTTCTATGACAGGGAGGCCATTCTAATGGATGCTGTGGATGGACCAATCCTTGCCTCTCTGTTAGTCGGCCCCTGTGCTCTGGAGTACACTAAGGTGAAGACAGCCGACCACTTCTGGACAGACCCATCTGCTGATGAGCTAGTCCAGAGACACCGCATCCACAGTGGCCACTGTCGCCAGGACTCCCCCTCCAGGCGACCTGCCCTGATCCAGAAGAGGCAGTCCAGTGGCAGTATGGAGGACCGGCCCATCCTGTGGGCTAGGGACTATGTTGAGTCCCTCCATCAGAACAACAGGGCTACACTGCTGTTTGGCAAGAACAACGTCCTGGTGCAgccgAGGGATGACATGGAGGCTATTCCAGGGTACCTGTCTCTCCACCAGACTGCAGATCTCATGACCCTGAAATGGACGCCCAACCAGCTCATGAATGGCACTGTGGCAGATGATACTGAAAAAAGTGTTTACTGGGACTTTGCCATGACTATTCGCCTGGCGGAGATTGTTTATCTGCACTGCCATCAGCAAGTGGACAGTGGTGGGACAGTGGTTCTGGTGAGTCAGGATGGGATCCAGAGGCCTCCACTGCGGTTCCCCCGGGGAGGACACCTGCTCCAGTTCCTGACCTGCCTGGAGACGGGCTTGCTGCCACACGGACAACTGGATCCCCCGCTCTGGTCCCAGAGGGGAAAGGGAAAGGTTTTCCCTAAATTGCGGAAGAGGAGTCCGCAGGGCTCTGTGGAGTCTGTGTCGGATAAAGAAGAGGACGAGGCCACTGACTATGTCTTTCGGATCCTGCTTCCTGGTACTCCGTCAGACTTTGTGGCTCCAGAGCTGATGGACCAGGCGTTGAACATGTGGCACCCCACACCCAGGAAGTCCTCCTGTTTCTCCTGCGCTCTCAACGGATCCCGTGTTGGCTCACTACCCAACGGCTGCAACCAGGACAGGGCTCCCCTGAAACTCCTCTGTGACACCATGAAGTACCAGATCATTTCCCGTGCTTTCTATGGTTGGCTTGCCTACTGCCGTCACCTGTCCACTGTTCGTATCCACCTCTCTGCCCTGGTCAACCCCACCATCGTCGACCCTAACGTGCCTCATGATGCCCAGGAAGGACTCACTGTGGATGTCTGGAGCAGCTTCCTCCAGGACCGCTCTGCATATGATGAGCATGAGCTTCTGCGTCTGGTGTACTATGGTGGTGTGGCTCCTACAATACGCAAGGAGGTCTGGCCATTCCTGCTGGGACACTACCACTTCGATATGACCCAGAAATGTAGGATGGAGGTGGATGAGCAGGTGCGGGCCTGCTATGAGCAGACTATGAAAGAGTGGCTGGGCTGTGAGGCCATCGTAAagcagaaagagggggagaagcaTGCTGAAGCCATAGCCAAGTGCAACTCTGTGGCCAGTGTGGACAGACCAGGACCAGTGCAGAGAGACTCCACCATCAGCACTGATTCCTCACAGAGCATTGGTTCAGACAAACAGATTGCCCACTCACAGAGTGACTCCAGAAGTAACACACAGGCATTTTGGTTTGTCGAGGAAGTGGAACTGATTGAATCTGAGACTAAGCGAGAGAAAAGCAAAGAGCGGTCCAAAACCCCACTGAAAGACCTCAGAGATGTAgccatcccaaatggtacctcaGACTCTGGGGACCCATCCTTCTACAGCTTGTCTGTTGACTCAGGTCTTCCAGAACAGCCTCAAAGCACAAACAACAGCAACAGTCCTGTATCTGACTCACCAGTCAGACCAGCAGCCACTCAGCCATCACCAGAGCCATCAGCGGTCCAAGGAGCTGCAACTAGCCTAGTGGCCAAGGCTGAGCCACCCCCAATAGAGAGTTCTTTCACTGTCTTGGGAACTGAAGTTGGATCTGAAGACCTAAAGCTGCCGATAAGAGTTGACGACAAGGCTGCATCAGCCGGAGAGTTCAAGGCCCCAGAGCGTGAAGTGGTTGAAAGCTCTAGATTGGTAGAAATCGTGAAAACCTCAGAGAAAGTTGAAGAGGGTTCTGACAAAAAATATGCAAAGTCCTTAGGAAATGTTGAAATGGAAGAAAACAACGTTATAGCAGATGGGTTGTCTGAAGTTTCCACCACAGAAGACACAAAGCTCCTTGTGAGAGCAGTGTTTGCAACTGAGAATACTGATATTCTGAAACTAGAAATGGAGGTTTCTAATGTATATATTCCAGCTCCGCCACTAGGCGAGGCCACATTTACTAAAACACAAGAGAACAAAGCCCCAGCGACAGAGCCCTTCTGTTCCAGAGAGCCATCTGTAACAGAAGGAAATAAAGATTCAACAACGATAAGGGAGGCTGGTATTGCTGAAAAAGAGGACACAACCACCTCTGAAATGGAAGAAATCACAGAATCTGAATTTCAAAAAACGCAAACCCCTCCAACCAGCAAGGCTTGTGTTTGTGAGAAAGACATGGATAGTACTAAAGAAAAGGTTGCAGATGTATTTGTAACCAAACCATTAGACTCTGTGGAGGCCAATTTCCCTGAGAATTACAATAACAAAGCTGCAGAAATGACAGCTGCCATAGATTCAGAGAAACATGCACCTGCATTGCCAGTACTGAATCCACCCCTGCCTGAGGCCAGGGCCAGTGTTACAGTGACATCCCACTCTAGGCGATCTCCTGATACACTAGATTCTGATGACTCGCCCTCCGCCTTAGAGATGGAGGATATTCCCACGGCCTGGGCTAGACCTTTGTCTGGCCTGATGGCTCCCCCAGCTGCCCCCTTGGCCCtggggagagttggctcaggggAGCCTGTCCTGGATGCACCCTCCAACACCAGTCCTGATGGAACAGAGCTAGCCCTGTCTGAGGAGGAGCCTGAGATGGAAAGTCTCTACACTCAGTCTGACTCTGTGGTTGAGACAGAGGAACTCAAACCTGATGTCTCACCAGTGGCAGTGTCCCCAGCAGGGACTACCTATTCTCAAGAGCAGCTGGATTTGTACTTGCTCAACCTGCATCGCATTGATAAGGACGTGAGGCGCTGTGACAGATCCTACTGGTACTTTACTCCTGCTAACCTGGAGAAACTACGCAACATAATGTGCAGTTATGTATGGCAGCATCTGGAGATTGGCTATGTCCAGGGCATGTGTGATCTGCTGGCTCCTTTACTGGTCATTCTGGATGACGAGGTCATAGCGTTCAGCTGCTTCTCTGAGTTGATGAAAAGGATGAATCACAACTTCCCCCATGGAGGGGCCATGGACTCACACTTTGCCAACATGCGCTCCCTCATCCAGATCCTTGATGCAGAGCTCTTTGAAGTGATGCAGATGAATGGAGACTACACTCACTTCTACTTCTGCTACCGCTGGTTCCTGCTAGACTTCAAACGAGAGATGGTGTATGATGATGTGTTCTCCGTGTGGGAGACCATCTGGGCGGCCACGTATACCTCCTCCACTCATTTTGTCCTCTTCATCGCTCTGGCACTGGTGGAGATGTACCGAGACATCATCCTGGAGAACAACATGGACTTCACTGACATCATCAAGTTCTTCAACGAAATGGCCGAACATCACAACGTCCCGCAGGTCCTAACGATGGCTCGAGACTTGGTCCTCAAAGTGCAGACTCTCATAGAAAACAAGTAATCCACCATGTGTCTGTTCCTTTCCCTTTCACTCAGTGTGCAACATTTTGACAATGTGTTCACTTGTATTTGTAtgaaagctaaaaaaaaaaatattctgtatTTCAAAATCATGCTTCTAAATAATTATTTATATTCCTGAAATCATCAGGTGACCCATACTGAAAATATACTCACACTACAATAATTGCACAACACAATATTTCTGTGTCTCTAAAAGCACTTTCCTATGTTCAGGTAATTAACATTATAATCAATACGTTTGAATAAATGTAATTGTTCACTTAGTGAATGTACCCTTTTAAAAACAAAAACTCTTTTGCATATTGCTTCAGgatgtttttgtatttgttttgccTTAAATTTAGCTATTTTGTGCAGGGATATTCTCAATATGATTACCAAATTAGATATTGTTTGTACATTGCCATCATGCACTTCCCATCAGTTAGAACCATTCACAGAGTAGAGGTGCAGCCCTCCAACATGGTAGCCAGTATTTTTGTATTAGTGCTTAAATCGGTCTCTTCATTATATATTCACCTGGCtaaatgtctgtgtgtattgCTGTGGTACTGTAATGTTAACTGTAAAAGTATTTGTAACACAAAGGCTAATGTTCAAAGTATCTGTGAGCATAACAATGGAGCTAAATTGTTTCATATCATATATGTACACACGTCAGCTACTGTACATATGATCAGAAATGTACACACGTCAGCTACGGTATATGTGATCAGATATGTACACATGTCAGCTACTGTACATGTGATCAGATATGTACACACGTCAGCTACTGTACACGTGATCAGATATGTACACATGTCAGCTACTGTACATGTGATCAGATATGTACACACGTCAGCTACTGTACACGTGATCAGATATGTACACATGCCAGCTACTGTACACGTGATCAGATATGTACACACATCAGCTACTGTACATGTGATCAGATATGTACACACGTCAGCTACTGTACAGGTGATCAGATATGTACACACGTCAGCTACTGTACATATGATCAGATATGTACACACGTCAGCTACGGTATATGTGATCAGATATGTACACATGTCAGCTACTGTACATGTGATCAGATATGTACACACATCAGCTACTGTACATATGATCAGAAATGTACACACGTCAGCTACGGTATATGTGATCAGATATGTACACACGCCAGCTACTGTACACGTGATCAGATATGTACACACATCAGCTACTGTACATGTGATCAGATATGTACACACGTCAGCTACTGTACATGTGATCAGATATGTACACACGTCAGTTACTGTACATGTGATCAGATATGTACATGTGATCAGATATGTACACACATCAGCTACTGTACCTGTGATCATATATGAACACACGTCAGCTACTGTACATGTGATCAGATATGTACACACGTCAGCTACTGTACATGTGATCAGATATGTACACATGTCAGCTACTGTACATGTGATTAGATATGTACACACGTCAGCTACTGTACCTGTGATCATATATGTACACGTCAGCTGCTGTACATGTGATCAGATATGTACACACGTCAGCTACTGTACATCTGATCAGATATGTACACACATCAGCTACTGTACATGTGATCAGATATGTACACACATCAGCTACTGTACATGTGATCAGATATGTACACACGTCAACTACTGTACATGTGATCAGATATATACACACATCAGCTACTGTACATCTGATCAGATATGTACACACGTCAGCTACTGTACATGTGATCAGATGTACACACATCAGCTACTGTACATGTGATCAGATATGTACACACGTCAGCTACTGTACATGTGATCAGATATGTACACACATCAGCTACTGTACATGTGATCAGATATGTACACACGTCAGCTACTGTACATGTGATCAGATATGTACACACGTCAGCTACTGTACATGTGATCAGATATGTACACACGTCAGCTACTGTACATGTGATCAGATATGTACACACGTCAGCTACGATATATGTGATCAGATATGTACACACGTCAGCTACTGTACATGTGATCAGATATGTACACATGTCAGCTACTGTACATGTGATCAGATATGTACACACGTCAGCTACTGTACATGTGATCAGATATGTACACACATCAGCTACTGTACATGTGATCAGATATGTACACACGTCAGCTACGGTATATGTGATCAGATATGTACACACGTCAGCTACTGTACATGTGATCAGATATGTACACATGTCAGCTACTGTACATGTGATCAGATATGTACACACGCCAGCTACTGTACATGTGATCAGATATGTACACACGCCAGCTATGTGATCAGATATGTACACACGTCAGCTACTGTACATGTGATCAGATATGTACACACGCCAGCTACTGTACATGTGATCAGATATGTACACACGTCAGCTACTGTACATGTGATCAGATATGTACACACGCCAGCTACTGTACATGTGATCAGATATGTACACACGTCAGCTACTGTACATGTGATCAGATATGTACACATGTCAGCTACGGTATATGTGATCAGATATGTACACACGTCAACTACTGTACATTTGATTTGTCGCAtgacaataaaaataaataaaccgtCAAACATATATGAGCAAAGgagaaaaatacaaatattttttatatgTATTCTTGAActgtttattgttgttattaCTTTGCTGTGTATTAAACAATCCGTATATTTTGGATTCAGCATTGTGT

Function

GO: NA

KEGG:

id description
K21847 SGSM1, RUTBC2; small G protein signaling modulator 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1193842 lncRNA upstream 20237 20858817 ~ 20871751 (+) True G1047583
TU1193823 lncRNA upstream 64490 20827040 ~ 20827498 (+) True G1047565
TU1193795 lncRNA upstream 94008 20796080 ~ 20797980 (+) True LOC118937641
TU1193791 lncRNA upstream 97639 20794082 ~ 20794349 (+) True G1047540
TU1193790 lncRNA upstream 98058 20793083 ~ 20793930 (+) True G1047539
TU1193851 lncRNA downstream 19779 20932571 ~ 20933858 (+) True LOC110537167
TU1194041 lncRNA downstream 68643 20981435 ~ 20981921 (+) True G1047744
TU1194054 lncRNA downstream 79365 20992157 ~ 20992457 (+) True G1047757
TU1194060 lncRNA downstream 83930 20996722 ~ 20996996 (+) True G1047763
TU1194063 lncRNA downstream 85671 20998463 ~ 20998750 (+) True G1047766
XM_021622983.2 mRNA upstream 45726 20804025 ~ 20846262 (+) False LOC110537160
XM_021622984.2 mRNA upstream 45726 20804025 ~ 20846262 (+) True LOC110537160
XR_005034909.1 mRNA upstream 90936 20796114 ~ 20801052 (+) False LOC118937641
XM_021622982.2 mRNA upstream 198027 20667957 ~ 20693961 (+) False LOC110537158
XM_036937158.1 mRNA upstream 521445 20107346 ~ 20370543 (+) False LOC110537154
XM_036937180.1 mRNA downstream 19744 20932536 ~ 20933866 (+) False LOC110537167
XM_021623005.2 mRNA downstream 48711 20961503 ~ 20964467 (+) True LOC110537168
XM_021623008.2 mRNA downstream 376292 21289084 ~ 21298403 (+) True LOC110537171
XM_036937182.1 mRNA downstream 551755 21464547 ~ 21479892 (+) False LOC110537175
XM_021623011.2 mRNA downstream 551765 21464557 ~ 21481116 (+) True LOC110537175
TU1193645 other upstream 200246 20690827 ~ 20691742 (+) False LOC110537158
TU1193644 other upstream 200719 20690827 ~ 20691269 (+) False LOC110537158
TU1193125 other upstream 380469 20509269 ~ 20511519 (+) True G1046929
TU1193001 other upstream 598137 20282886 ~ 20293851 (+) True G1046823
TU1192894 other upstream 744574 20144179 ~ 20147414 (+) True G1046724
TU1194759 other downstream 920302 21833094 ~ 21834812 (+) True G1048417
TU1195985 other downstream 1613149 22525941 ~ 22526232 (+) True G1049502
TU1196129 other downstream 1816138 22728930 ~ 22737666 (+) True G1049629
TU1198209 other downstream 3264638 24177430 ~ 24177934 (+) True G1051534
TU1199317 other downstream 4439792 25352584 ~ 25356008 (+) False LOC110537258

Expression Profile