RNA id: XM_021623005.2


Basic Information

Item Value
RNA id XM_021623005.2
length 2462
RNA type mRNA
GC content 0.46
exon number 3
gene id LOC110537168
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 20961503 ~ 20964467 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATGTTTGATGTGTAAACATGGGGGCAGTGTCTTGTTGTTTGGAAAAAGGATGATGACACATTCACTCTCTTGGGGCTTATCAGACTCTCTTCTTTCGCTAGATGGTTTCTCTATTTCCCTGCATTATTTTATCACAGGGCCTCTCCAAGATTCACTGTGCTattaaaataatattttgttCCTACAATGTCTGTGATGGCCATGAAATACCTGTGAAGTACCTGTTCCAATCATTATAGTTGGCTTGACGTTGCAGGAATGCTTGGTTTTGGTGTGAGGAAAAGACGGTGCAAGTCAATAGCAAGAAGACTGGCTGTAGGAGTTCTATTGACCAGTTTCATGGTGATATTGCACTGCTTATCTACCCCAGCAGTCCAACAAGTCAATCAACAAAAGGTTACAGTGGCTCTGTCGTGTTCTCACCACTTATCTCAAACATGGGTCCACAATTTGACCAACTACTCTCAAAGCAGAACAAGTCTGTCAGGGGAGTGTGTGCCCACGTTGGACATCATGTTCATGAAGACCCACAAGACTGCCagcagcacattactcaacatcATCTTCCGCTTCGGTGAGAAGCACGGTTTAAAGTTTGCCTTTCCTAAAGGTCGCAATGACTTCTCCTACCCATCCCCTTTCCTTTGCTCCCATGTCAAAGACTTCCAGCCTGGGGTATGTTTCAACATCTTATGTAACCACATGCGCTTTAATGGGCATGAGGTGGCAAAGCTCCTCCCAGCAGACGCTGCCTATTTCACCATCCTACGAGACCCGGCGGAGTTGTTTGAGTCATCCTTCCATTATTACAGCCGAGCGATTCCCCTCACCTGGGGGATCCACGGAGATGGCAAACTGGCTGAGTTTCTGCGTGAACCCATGAACTACTACACCCCAGGGAGCTACAACTCATTCTACCTCAAGAACCTGCTCTTCTTTGACTTTGGATTTGATAACAACTTAGAGCCTGACCACCCTCTGGTGGAGAGGGGTATTCAGACCTTGTCCCAACGCTTCCAGCTGGTCCTGATGGCGGAGCATTTTGAGGAGTCTCTCATCCTGCTGAAAGATACACTCTGCTGGACGATGGAAGATATGCTGTTCTTCAAGCTCAATGCCCGCAAGGACTCATCTGTGTCACGACTGACCCCTGCACTAAGGGCCAAGGCCCGGGAGTGGAACGGGGCCGACTGGAGGCTCTACCAGCACTTTAATGCCACATTCTGGGCCAAGGTGGAGGCATACGGGTGGACACGGATGGAGCAGGAAGTGAAGGAGCTGAGGAGGAGGAATGCAGAAATGGCTGCCATGTGCATTGAGGGTGGGGGAGCAGTGGAGGCTGGGCTGATTCGGGACACAGATCTGCTTCCCTGGCAGCCAGTTGGAGAGAACTCCATCCTGGGTTACAATTTAAGGAAAAACATTGACCCCAAATACAGGGAACTCTGTCGGAAAATGCTCACACCTGAAATACAGTACCTATCAGAGCTAGGGGTCAACTTGTGGCTCACAAGATTATGGGGTTGGTTAAAGGATACTATATTCTAGCTAGAAACAAATTTATGGGAACAATTTGGATACATTTTTAAGAGTATAAACTGGGGCGGTGGGTGCTACTAGTATAATATATGGAATCGTTTTTttatggtcataccaaggatcatttaacTATTTGATTTTAAATTGCAGAACCCCTTTGGCCTTATtgttattagcccatagaaacacattgaatgacagattcatacatggaaaaacagataGTTAAAAATAATTCATAAGGAAGTTTGTTTTAAAGTGTTTGTCCTATGTCAATTGTGAGACTCACATGTTtggtatcaaacacgtggtttccctgtgtttgataccattctattGACTTCCTTCCAGcgattattatgagctgtcctcccctcagcagcctccactgacttcCATATATTTTTTCCAACTGCTACTGGGCTACCTTCAGACGAGTTCTGTGAGCcttgtgggcatcctagagcaaaacaacatgtacgtgtttgtgagccTCACCTTTCCAttaggggtcatattagtgtgtagcccaaactgtttggacgctacagacagaagttggcagatcggcggTACTGAATTCAGATGAGTCTCATGACgcttgtgggggtcatagagcaaaacggagaacacccccgtgttcgtgagagtctcatttTTTCCgagtggtcatattagtttgcAGTGTTTGTCTCAtgatctgacaaacactgctgtagctcggccaccttccaccgcagacgTGGAAGGCCGCCATTGGCAGATGCGGTGGATTGCAAAAAAAACGTTCTAGCTTAAACAGACGTATTTTGATGGCacatttttgtattatgctaattagctTTTTCACGGGGGCTTGGAAATCAACTGTAGGGGTGTTAAATAACTTGGGGTTGCAAATAAAGATACACTTTGTGACTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1193851 lncRNA upstream 27645 20932571 ~ 20933858 (+) True LOC110537167
TU1193842 lncRNA upstream 89752 20858817 ~ 20871751 (+) True G1047583
TU1193823 lncRNA upstream 134005 20827040 ~ 20827498 (+) True G1047565
TU1193795 lncRNA upstream 163523 20796080 ~ 20797980 (+) True LOC118937641
TU1193791 lncRNA upstream 167154 20794082 ~ 20794349 (+) True G1047540
TU1194041 lncRNA downstream 16968 20981435 ~ 20981921 (+) True G1047744
TU1194054 lncRNA downstream 27690 20992157 ~ 20992457 (+) True G1047757
TU1194060 lncRNA downstream 32255 20996722 ~ 20996996 (+) True G1047763
TU1194063 lncRNA downstream 33996 20998463 ~ 20998750 (+) True G1047766
TU1194073 lncRNA downstream 42069 21006536 ~ 21006888 (+) True G1047776
XM_036937180.1 mRNA upstream 27637 20932536 ~ 20933866 (+) False LOC110537167
XM_021622992.2 mRNA upstream 48711 20891988 ~ 20912792 (+) True LOC110537163
XM_021622983.2 mRNA upstream 115241 20804025 ~ 20846262 (+) False LOC110537160
XM_021622984.2 mRNA upstream 115241 20804025 ~ 20846262 (+) True LOC110537160
XR_005034909.1 mRNA upstream 160451 20796114 ~ 20801052 (+) False LOC118937641
XM_021623008.2 mRNA downstream 324617 21289084 ~ 21298403 (+) True LOC110537171
XM_036937182.1 mRNA downstream 500080 21464547 ~ 21479892 (+) False LOC110537175
XM_021623011.2 mRNA downstream 500090 21464557 ~ 21481116 (+) True LOC110537175
LOC110536816 mRNA downstream 546022 21510489 ~ 21516816 (+) True LOC110536816
XM_021623018.2 mRNA downstream 634298 21598765 ~ 21626234 (+) False LOC110537179
TU1193645 other upstream 269761 20690827 ~ 20691742 (+) False LOC110537158
TU1193644 other upstream 270234 20690827 ~ 20691269 (+) False LOC110537158
TU1193125 other upstream 449984 20509269 ~ 20511519 (+) True G1046929
TU1193001 other upstream 667652 20282886 ~ 20293851 (+) True G1046823
TU1192894 other upstream 814089 20144179 ~ 20147414 (+) True G1046724
TU1194759 other downstream 868627 21833094 ~ 21834812 (+) True G1048417
TU1195985 other downstream 1561474 22525941 ~ 22526232 (+) True G1049502
TU1196129 other downstream 1764463 22728930 ~ 22737666 (+) True G1049629
TU1198209 other downstream 3212963 24177430 ~ 24177934 (+) True G1051534
TU1199317 other downstream 4388117 25352584 ~ 25356008 (+) False LOC110537258

Expression Profile