RNA id: XM_021623008.2


Basic Information

Item Value
RNA id XM_021623008.2
length 3219
RNA type mRNA
GC content 0.50
exon number 11
gene id LOC110537171
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 21289084 ~ 21298403 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTCATTGAAGCACAGACTTTGTGCTAACAGCCTACCGGTAGGCTACTTCATTTACTAGAGCATACCGCCACCCTCTGGATGGGTAACTTTTTGGACAACATAGAAAAATAGTTTCAGTGCTTTTTGGAAGAAAGTCAGACATAATTCCACGGGAAAGCCCTTGGAGGGATGGTGTTCATCacaacatggaaacaaccagAAATGTCTTCGTAATTGTGCTTCTAAATTTCTTCTTTTTTGGGATTTACAGCCATGAACTAAATCCCAGAGGTAGAAATGTATGCGAAGCTGGGCTCCAATGCTGTAGTGGCTTCGCACAGCAAGGAGATGAGTGCTTAATACCAATTTGTGAGAGTAACTTCACCTGCAAAGTGAATGAAGTTTGTGTGCGACCCAACGAATGCCGCTGTCGTTCTGGTTATTTTGGAGCCACTTGTGACATGAAATGTCCGTCCCAGTTCTGGGGACCTGACTGTAGGGGTAAGTGTGACTGCCATCCCAATGGGAGTTGCGAGGATGTCACTGGGGCCTGCACCTGTAACCCTAATCGCTGGGGGGCAAACTGTGAGAGAGCCTGTGATTGCCAGAAGGGCCAATGCAACCAGGAGACAGGCGCTTGTACGTGCTACGCAGGCTTCTGGGGCTCCCAGTGCTCCACCAACTGTCACTGCAGCATCAACTCTGTGTGTGATGTGGGAACGGGCCAGTGCCACTGCAACCCCGGCTGGTATGGGAGGAACTGTGGTGCTCAGTGTGCCTGCAACGGTTCTCCGTGTGACCAGCTCACCGGGCGCTGCAAGTGTCGACAGCGTTTGTGGGGTACTCACTGCGAGCGCATGTGTAAGTGTATCCATGGACGCTGTAACCAGGCGGATGGATCGTGCACCTGCAGGCCAGGATTCAGAGGGAGGTTTTGCAGGGAGCCGTGTCCAGCTGGGTTATACGGACAGAATTGCAGAAACAGGTGTGGACACTGTAAAGGCCAACAGCCCTGCAAGGTGGCAGAGGGACGTTGCGTTGCATGTGAACGCGGTTGGAATGGCACCAGGTGTGACCAGATGTGTGCTCCTGGGTTCTTTGGTGGAAACTGCGAGGACGTGTGCTCCCCCTGCAAAGATGGACACTTCTGCAACCGCATCGACGGCAATTGCCCCCACTGCAACCCTGGTTGGATGGGTGATCGATGTGAGCTCAAGTGCCTGAATGGAACCTATGGAGAGAACTGTGTCAATAACTGCAACAGCTGTTTCAATGGGATGTGTCACTTCGCTACAGGAGAGTGTCTCTGTGACCCTGGCTTCTCTGGTGCCTACTGTAATGTGAGCTGTTCAGAGGGTCAGTATGGGGTTAACTGTGCCCAGATCTGTTCCTGCCATGACAACAACTGCAACACAGTGACTGGAGCATGCAACCTACAGCCTAACCAGAGGATGGGTGTGATGGCAGCAGGGGTGCTGgtcacctgtctcctccccctgctcctctccttgttgTGTTGCTGCTGTATCTgtagacagaacaaacagaacgACCACGAGAAAAAATCCCAAAGACTCTGTGAAGGGTTTACACGAATCAGCTCTAAGCTTCCTTGCATCCCACTGAGACGGCAGAAGCTACCCAAAGTTGATGTGTCCCACCATGACCATGAGAATACtttcaactgtagtttcatcgaGCCCCCCTCCGCAGTGGAGCAACCCACCACCTGCGGGTCGTCCCGAGCCTCTTCTTCCGTAGAGACCACAGAGGATGGACATGTCTATGCTGTCCCTGACGaaCCTGGAGAACAGaacaaaaataaagggaacagaaTCGACACAACAGAGACTAGAGTACTGGCTGATTATGATGATATCTCTGAGGTAGACACATTGCCGGAGAACATGGCCATGACTATGCAGGTCTCAGTTAACACCAGTGAGCTGCCACTCCAGAAGTCCTCAGAGAATGAAGGCTCCTGCAGTGGCACAGAGTCAGCCAACAGCATCCGCCTCCGGGCCCATGCTCCGCAGCCACCCCAGCAGTCCAGCAAGGAGAACAGTGTAGTGTCAAACACCGTCAAAGACAATGGAAAGCCTACAGCTGCTGAGAGGGTTAAACCTCAACCACCAGACCCCTCTACAAAGCCAAAGCTATCCTGGGTCCATGCATCTCCTGGGCCGAAACAGAATAATAGTCAGGAAAAGACTGTGGCTGAGGAGAAAACGAGTTCCAGGAAGAAAGCCAGCAAGCAGCAAGCTCCCAATGCCGCAGAGTCTGCATGTACAGATGGGGCTGGCTTCCAAGGGGAGAAGAAGTCAACTAAAAGCAGATCTGGTATGTTGCAGATAGAGCACATCAACGGGGCAGTGCAGAGTGTCCTCAGGAAAATGGGCAACTTCCGTGCTGACCGGAAGCCTGAAATCCAAAGAGAGTCCGCAGAGAAGAGCCCCAGTTTATCCCTAAACAGGGAGGTTAACCAACTGAACATACACTCGGAGGCAGCCTCTCTCTTAGCTGCTCAGCTGAAGGAGAAGACTCAGAGCCTGAACAGGAGTGAGACCGGCTGCTGTGAGGAGAGCCTGTCTCACCTCCAAGCCCATGGAAAGAAGCAGACCTTGCCCCAAAAGACTGGAGCAAAGGTTCTGCTTCCCACATCCGCTAGTTCACAGAAGCCTCTGCCAGATACGCCATCTAAAGAAGCCAAAATCCCAGAGAAACAGGACTCTAACCACTCTGAAAGCAGTTCAGAGAAGGGAGACTCCACAGTAAAGAAGGCCCCAATGACAAAGCCTCCTCGGAAAAAAAACAAGGAAGGAAATATAGACTCAAAAACAAAGACTATTGCTCCAAGGGTTGCAGTGACGCCACCTCAGGCTGCAAGTTAGTGTGGTCAGTGTTGTTAATTTTCAATTCTGAGAAAACAACGCACATGTTGAGATGTCTGAAATATTTTTTGGGACACATTTGTTTCATTGTGTTTTGCCCCAAATCGAATATCGATGGAATATTTTCCCTTCTGTGGGTGTTTTTCATCTTGAGAAATGTTATGATATAATGCAGTAGTCTTTCTATTTTAACTTTTTATTTTCCTTCATCATAGCTATTCTCAAATCAATGTATTGTATAACAGTGAGTGCTaggaggtctgaatacttatttacctTGATCAATCGTCATTATTGTACCCAACATTTGCTAATTTGTTCATATTGAATAAACAAAACACCCCAAAA

Function

GO: NA

KEGG:

id description
K24319 SCARF2; scavenger receptor class F member 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1194416 lncRNA upstream 19579 21269292 ~ 21269505 (+) True G1048104
TU1194382 lncRNA upstream 30796 21217513 ~ 21258288 (+) True G1048070
TU1194258 lncRNA upstream 165302 21123578 ~ 21123782 (+) True G1047952
TU1194117 lncRNA upstream 260069 21028744 ~ 21029015 (+) True G1047816
TU1194102 lncRNA upstream 264960 21022260 ~ 21024124 (+) False G1047803
TU1194426 lncRNA downstream 13531 21311934 ~ 21312642 (+) False G1048109
TU1194427 lncRNA downstream 13531 21311934 ~ 21312642 (+) True G1048109
TU1194398 lncRNA downstream 27411 21325814 ~ 21330328 (+) True G1048086
TU1194519 lncRNA downstream 102132 21400535 ~ 21409688 (+) True G1048194
TU1194564 lncRNA downstream 184155 21482558 ~ 21482871 (+) True G1048237
XM_021623005.2 mRNA upstream 324617 20961503 ~ 20964467 (+) True LOC110537168
XM_036937180.1 mRNA upstream 355218 20932536 ~ 20933866 (+) False LOC110537167
XM_021622992.2 mRNA upstream 376292 20891988 ~ 20912792 (+) True LOC110537163
XM_021622983.2 mRNA upstream 442822 20804025 ~ 20846262 (+) False LOC110537160
XM_021622984.2 mRNA upstream 442822 20804025 ~ 20846262 (+) True LOC110537160
XM_036937182.1 mRNA downstream 166144 21464547 ~ 21479892 (+) False LOC110537175
XM_021623011.2 mRNA downstream 166154 21464557 ~ 21481116 (+) True LOC110537175
LOC110536816 mRNA downstream 212086 21510489 ~ 21516816 (+) True LOC110536816
XM_021623018.2 mRNA downstream 300362 21598765 ~ 21626234 (+) False LOC110537179
XM_021623019.2 mRNA downstream 300362 21598765 ~ 21626234 (+) False LOC110537179
TU1193645 other upstream 597342 20690827 ~ 20691742 (+) False LOC110537158
TU1193644 other upstream 597815 20690827 ~ 20691269 (+) False LOC110537158
TU1193125 other upstream 777565 20509269 ~ 20511519 (+) True G1046929
TU1193001 other upstream 995233 20282886 ~ 20293851 (+) True G1046823
TU1192894 other upstream 1141670 20144179 ~ 20147414 (+) True G1046724
TU1194759 other downstream 534691 21833094 ~ 21834812 (+) True G1048417
TU1195985 other downstream 1227538 22525941 ~ 22526232 (+) True G1049502
TU1196129 other downstream 1430527 22728930 ~ 22737666 (+) True G1049629
TU1198209 other downstream 2879027 24177430 ~ 24177934 (+) True G1051534
TU1199317 other downstream 4054181 25352584 ~ 25356008 (+) False LOC110537258

Expression Profile