RNA id: XM_036937182.1



Basic Information


Item Value
RNA id XM_036937182.1
length 909
RNA type mRNA
GC content 0.47
exon number 7
gene id LOC110537175
representative False

Chromosome Information


Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 21464547 ~ 21481116 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


AGTCTGCCAGAAAAGCAGACGAAGAAGAAGTAGTGAGACAACTACATCAAAGGAGACTGCCAAGTTGCGGAAGTGCGCGCTCTGTCTGCAGAGAATGACACCTTGAAATGCATTAGGACCTTGAAGAAACTGGCTTATTACTTAATTATGAGCGCAGCCGGTATCGACCAATAACATGAGTTGGAGTAGGGGATGTGCTAATGAAAAAATATCTGTTCCACTGAACTGACGCTGTTTCGATTTCAGTAGTTACCAGCGTTGTCCTGAGCGAGACCAATCGGTATTTCCATGCGTCTGGATTGGTCGGCTGGCAAATTTCTCGAGTTATGGGCGCATTACAGTCATTATCTGATGAACCAGAATATAGAGAATTGGCAGAGAAGACGGGCTTTTCCTTCGAGCAGATTGGAATCCTGCACAAAAGATTCAAGCAGTTGAGCCACAATGAAGACATGCTGAGGAGAGCTGACCTCGACACAATTCCAGACCTGGCATGCAATCCAATCCGCACCCAAATTATAGAGGCCTTCTTTGACAAAAGAAACTTCCATCAGAATGGTGACGGGACGGTCGAGGAGATCAGCTTTGAGGAGTTCCTTGTGGTGATGTCCCACTTCAGACCTCCAGCACTGAAcatgacagaggaacagagagagaaggtcagGAGGGAGAAACTCCGCTTCCTGTTTAACATGCACGACACAGACAACGATGGAACAATCACTCTGGAGGAGTATCGACATTGTACTGTAGGTAGTGGAGGAGCTGCTGTCTCGGAGTGGAGCCCTGGGAAAGGAAACGGCAAAAGGAATAGCAGATGCTGCCATGCTGGAGGTAGCCAGTATTTCCATGGGTCACATGGAACCAGATGAGTTTTACGAGGGGATCACTTTTGAACATTTTCTAAAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1194519 lncRNA upstream 54859 21400535 ~ 21409688 (+) True G1048194
TU1194398 lncRNA upstream 134219 21325814 ~ 21330328 (+) True G1048086
TU1194428 lncRNA upstream 151905 21275173 ~ 21312642 (+) False G1048109
TU1194426 lncRNA upstream 151905 21311934 ~ 21312642 (+) False G1048109
TU1194427 lncRNA upstream 151905 21311934 ~ 21312642 (+) True G1048109
TU1194564 lncRNA downstream 2666 21482558 ~ 21482871 (+) True G1048237
TU1194578 lncRNA downstream 8721 21488613 ~ 21488842 (+) True G1048250
TU1194581 lncRNA downstream 11915 21491807 ~ 21492020 (+) True G1048253
TU1194584 lncRNA downstream 13644 21493536 ~ 21493765 (+) True G1048256
TU1194585 lncRNA downstream 22360 21502252 ~ 21502656 (+) True G1048257
XM_021623008.2 mRNA upstream 166144 21289084 ~ 21298403 (+) True LOC110537171
XM_021623005.2 mRNA upstream 500080 20961503 ~ 20964467 (+) True LOC110537168
XM_036937180.1 mRNA upstream 530681 20932536 ~ 20933866 (+) False LOC110537167
XM_021622992.2 mRNA upstream 551755 20891988 ~ 20912792 (+) True LOC110537163
XM_021622983.2 mRNA upstream 618285 20804025 ~ 20846262 (+) False LOC110537160
LOC110536816 mRNA downstream 30597 21510489 ~ 21516816 (+) True LOC110536816
XM_021623018.2 mRNA downstream 118873 21598765 ~ 21626234 (+) False LOC110537179
XM_021623019.2 mRNA downstream 118873 21598765 ~ 21626234 (+) False LOC110537179
XM_021623020.2 mRNA downstream 118873 21598765 ~ 21626234 (+) False LOC110537179
XM_036937186.1 mRNA downstream 118873 21598765 ~ 21626234 (+) True LOC110537179
TU1193645 other upstream 772805 20690827 ~ 20691742 (+) False LOC110537158
TU1193644 other upstream 773278 20690827 ~ 20691269 (+) False LOC110537158
TU1193125 other upstream 953028 20509269 ~ 20511519 (+) True G1046929
TU1193001 other upstream 1170696 20282886 ~ 20293851 (+) True G1046823
TU1192894 other upstream 1317133 20144179 ~ 20147414 (+) True G1046724
TU1194759 other downstream 353202 21833094 ~ 21834812 (+) True G1048417
TU1195985 other downstream 1046049 22525941 ~ 22526232 (+) True G1049502
TU1196129 other downstream 1249038 22728930 ~ 22737666 (+) True G1049629
TU1198209 other downstream 2697538 24177430 ~ 24177934 (+) True G1051534
TU1199317 other downstream 3872692 25352584 ~ 25356008 (+) False LOC110537258

Expression Profile