RNA id: XM_021623011.2


Basic Information

Item Value
RNA id XM_021623011.2
length 1318
RNA type mRNA
GC content 0.43
exon number 8
gene id LOC110537175
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 21464547 ~ 21481116 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAAAGCAGACGAAGAAGAAGTAGTGAGACAACTACATCAAAGGAGACTGCCAAGTTGCGGAAGTGCGCGCTCTGTCTGCAGAGAATGACACCTTGAAATGCATTAGGACCTTGAAGAAACTGGCTTATTACTTAATTATGAGCGCAGCCGGTATCGACCAATAACATGAGTTGGAGTAGGGGATGTGCTAATGAAAAAATATCTGTTCCACTGAACTGACGCTGTTTCGATTTCAGTAGTTACCAGCGTTGTCCTGAGCGAGACCAATCGGTATTTCCATGCGTCTGGATTGGTCGGCTGGCAAATTTCTCGAGTTATGGGCGCATTACAGTCATTATCTGATGAACCAGAATATAGAGAATTGGCAGAGAAGACGGGCTTTTCCTTCGAGCAGATTGGAATCCTGCACAAAAGATTCAAGCAGTTGAGCCACAATGAAGACATGCTGAGGAGAGCTGACCTCGACACAATTCCAGACCTGGCATGCAATCCAATCCGCACCCAAATTATAGAGGCCTTCTTTGACAAAAGAAACTTCCATCAGAATGGTGACGGGACGGTCGAGGAGATCAGCTTTGAGGAGTTCCTTGTGGTGATGTCCCACTTCAGACCTCCAGCACTGAAcatgacagaggaacagagagagaaggtcagGAGGGAGAAACTCCGCTTCCTGTTTAACATGCACGACACAGACAACGATGGAACAATCACTCTGGAGGAGTATCGACATGTAGTGGAGGAGCTGCTGTCTCGGAGTGGAGCCCTGGGAAAGGAAACGGCAAAAGGAATAGCAGATGCTGCCATGCTGGAGGTAGCCAGTATTTCCATGGGTCACATGGAACCAGATGAGTTTTACGAGGGGATCACTTTTGAACATTTTCTAAAGATACTGAAAGATATTGAGATCGAGACGAAAATGAACATTCGCTTTTTGAATATGGACACGACGACCCTGTGCAAGTGAGGATCTTCCACTTGATTTTATTACTATGATGCACAAGCACTCTTCTATGGTCTTTTTATTTAGTGGCCAGTTAGGGCATACTTTACCTTCTCAGACCAACTATTACAAAGCTCTGTTTAATAGTTTTGGGTGACGGTTTGAGCTTCTACTATTTATTAGCCTCTAACACACACTTTATGTTTTTACAAATTTATTGGCTAAAAAAATATTTATGTGCAACTATGCAAATATACACAGATTAGCAGTAGGTATGTTATGAATTTAGCATGCCTGTATCTATCATATTTTATGCAAGAGTATTCACAATGCTCTAAATGCCATGAATCAATAATAAATTCAATAATAATGCAA

Function

GO: NA

KEGG:

id description
K17612 TESC, CHP3; calcineurin B homologous protein 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1194519 lncRNA upstream 54869 21400535 ~ 21409688 (+) True G1048194
TU1194398 lncRNA upstream 134229 21325814 ~ 21330328 (+) True G1048086
TU1194428 lncRNA upstream 151915 21275173 ~ 21312642 (+) False G1048109
TU1194564 lncRNA downstream 1442 21482558 ~ 21482871 (+) True G1048237
TU1194578 lncRNA downstream 7497 21488613 ~ 21488842 (+) True G1048250
TU1194581 lncRNA downstream 10691 21491807 ~ 21492020 (+) True G1048253
TU1194584 lncRNA downstream 12420 21493536 ~ 21493765 (+) True G1048256
TU1194585 lncRNA downstream 21136 21502252 ~ 21502656 (+) True G1048257
XM_021623008.2 mRNA upstream 166154 21289084 ~ 21298403 (+) True LOC110537171
XM_021623005.2 mRNA upstream 500090 20961503 ~ 20964467 (+) True LOC110537168
XM_036937180.1 mRNA upstream 530691 20932536 ~ 20933866 (+) False LOC110537167
XM_021622992.2 mRNA upstream 551765 20891988 ~ 20912792 (+) True LOC110537163
XM_021622984.2 mRNA upstream 618295 20804025 ~ 20846262 (+) True LOC110537160
LOC110536816 mRNA downstream 29373 21510489 ~ 21516816 (+) True LOC110536816
XM_021623018.2 mRNA downstream 117649 21598765 ~ 21626234 (+) False LOC110537179
XM_021623019.2 mRNA downstream 117649 21598765 ~ 21626234 (+) False LOC110537179
XM_021623020.2 mRNA downstream 117649 21598765 ~ 21626234 (+) False LOC110537179
XM_036937186.1 mRNA downstream 117649 21598765 ~ 21626234 (+) True LOC110537179
TU1193645 other upstream 772815 20690827 ~ 20691742 (+) False LOC110537158
TU1193644 other upstream 773288 20690827 ~ 20691269 (+) False LOC110537158
TU1193125 other upstream 953038 20509269 ~ 20511519 (+) True G1046929
TU1193001 other upstream 1170706 20282886 ~ 20293851 (+) True G1046823
TU1192894 other upstream 1317143 20144179 ~ 20147414 (+) True G1046724
TU1194759 other downstream 351978 21833094 ~ 21834812 (+) True G1048417
TU1195985 other downstream 1044825 22525941 ~ 22526232 (+) True G1049502
TU1196129 other downstream 1247814 22728930 ~ 22737666 (+) True G1049629
TU1198209 other downstream 2696314 24177430 ~ 24177934 (+) True G1051534
TU1199317 other downstream 3871468 25352584 ~ 25356008 (+) False LOC110537258

Expression Profile