RNA id: XM_021623045.2


Basic Information

Item Value
RNA id XM_021623045.2
length 4614
RNA type mRNA
GC content 0.46
exon number 10
gene id LOC110537193
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 21806199 ~ 21826261 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCGCCACCACTCGCAATCTGATCGGCGGTGTGGAGTGTTTTGGATTGTTGTGACTGGAGAATGGAGCCATCTTGTTTTATTTCTGTCCTGGAATACATTGGGCAGGCCGAACGAAAGACAGGGCTTTCGAATAATGATGTAGCTAGTTAGTGCGCTTGCTAACAATATTGcatatatttgtatgtttagtgCTTCCACCACTCTAAATGTATTTGAATGACTAGGTACTGTCTTTGGCGTTTATTAGGGTCAAAGCAAACGCGTTGGTTCAGGTGTCAGTTTATGTTATTTCTGAGTAGAGGAGTTACTATGAATGGAGGATAAATGTTGCCAAAGGCTGACAGCAGCAGTTacgttctcctctctcttctcttcgtCCTCACATTAACAGACCCACCACGGGCAGAACTGCGCTGCAGCCCTGGACAGTTTGCCTGCCGCAGTGGGAAGATGCAATGCATCCCCATGTCCTGGCAGTGTGACGGCTGGGCGGCTTGTGAGGACAAGAGCGATGAGTTGGACTGCCCCCCCATGAAAGAGGAGACGTTTCACTTTGCCAATGGGTTTGGTAATGGGTTTGACCAAGTGGAAGATGTCATCGGTGTGGCCCAGCCTGTGTTCTTTAACAAGAAGTGCCCTAGTGGGTGGCATCACTACGAGAAGACAGCCAGTTGTTACAAAGTGTACCTAAGGAATGAGAACTACTGGCAGGCTGTGGACACGTGTCAGAAAGTCAATGGCTCGTTGGCGACCTTCGTCACCAACGAGGAACTGCAGTTCATCCTCAAGATTGAGGTGGATTTCGATGAGGAAGTGTGTGAGCGCAGAGACCAGTGCAAGTTCTGGGTGGGTTACCAGTATGTCATCACCAATCAGAACCATTCACTGGAGGGCCATTGGGAAGTGTCATATAAAGGGTCGATGCAGGTGTTCTTGCCGCCAGAGGGCCTGACTAACTTTGGAGAGGCATCTCCGACCCAGGACAACATCTTCTGTGCCCAGCTGCAGCGCTTTCAGATCAAGAGTATGAACGAACGCGGCCTTCACAGCTGGCATGCCGAGAACTGCTACAAGAAGTTCCCCTTCCTGTGCAAGAGGAGGCAGACATGTGTGGACATAAAGGACCAGGTGGTGACTGAGGGGTACTACTTCACCCCTAAGGGGGAAGACCCGTGCCTGAGCTGCACATGTCACAACGGCGAGCCAGAGATGTGTGTGGCTGCGCTGTGCAATCGGCCAGAGGGCTGCAAGAACTTCGGCAAGGACCCCAAGGAGTGCTGCAAGTTCACCTGCCTGGACCGAGAAGGCAGCAGCCTGTTTGACTCTATGGCCAGTGGGATGCGTCTGATCGTCAGCTGTATCTCCtccttcctcatcctctctctgctgctcttCATGGTGCACAGGCTCCGGCAGCGCAGACGCCAGCGCATCCAAACACTCCTTGGAGttcaCCATTTCAACCTTGGGCGGCAAGTCCCAGGCTTTGACTACGGCCCAGACGCTTTTGGCACTGGCCTCActcccctgcacctctctgatgatggagagagaggtgcatTTCATTTCCAGGAACCTCCCCCTCCCTACGCTGCCTATAAATACCCTGACATCCAGCACCCAGATGACCCCCCTCCTCCCTACGAAGCCTCCAACCCCGACAGCGTCCTCTATGTGGACCTCGCACGCCATGGCGTTCAGATGATCCCTAGTCAGATGAGGGATGTGGTAGATGCCATGACAGACGCGCCACCTGTCCCTGTGCCAATGTCCTCCCAGGAGCGGGAGGACTCCATGGACAGCAGCACCCTCCTGGTGGGGCCTGACACCCCCACATACAGCCACACCCCTGACTCCATGCCTGTAGACTGCAGCAACAGCTCCTCCCTCAGCACCGTGGTATAGGACTAAGGGGGGCGGGGAGCTGCTCCCGCCTGGACCCACACTTTGAGAGAGGAGGGCAGTGGCAGACTGGTCTATCACATGGGGTCTGTTAGTTAGAAGAGACTGGGATGGGATGGAAAAAGACAGTGTAGAGACGGTATCAGGGTAGACTGAAGGACCAGTCCACTTCTTGAGGTGTGAGGAAAATCGGACTGGTGTGTTTCTTGATCAGGTGAACTGAAACCAAGTGGGTGTTTGTCAGAAACGTAACCTCTACAGTTGAACTTAAATGCAGTGGATCAGACCGCTTTCGTATAGGTGAATACAGATGGATGAGTAAGGCAATCAAATGGATCTGGAAGACTGACTCTGTACAGACaagacacacactacaccaggCTGAGCTACTGCTTTTAGTTTTCATTGGACAAAGCTTTTGAATTATTTGGTTTGTTTGAGCTTCATGCTCAAGATTTCTCCCAATATAAACACTCCCTCAGGCATTACACCAGGTAATAATGAAGGGGGAGGTAGATGGTTCCACTTCAGCTTAAGTCCTTTGCACTTCTTAATTTGCACCCTACTGCTTATGTCCTGGTGGCCGAGGCAGAACTTGGATTGTCAGTTATTGATAAtgactctgctctctctctaaaGTCTCCTCCACAAATGAAATACATTGTTTTCCTATCCCAAGCATTGCCTCTGAACTTGGATTGTTGCCCTCTCCAATCAATCTGATATGCTAAGACATCTTCGAGATTGATAGCACAATGGTAAATAGAACTAGAAATATTTAGGTATGGTTATTGTTAGCTCCAGCTATGTATTGATGATGAGGTAAATGCTACAACTTTTACAAGAATCTTGCAACAATATTGCATTTTGTTCATGAGTTTTTGTTGAAGTAGATGTCCATTGGTTGAGTATTGTGTCCTTTTCTTGGGTAAGAAATAGGCTGGGAATTGTTGGGACCTGAAGATAGATGATGGGTCCCTCATGTTAGTCAATGAGTTCACCACATGAAAGAGAATGTCACTGGTGAGTGAGAATTAAGGTTAGAGCTTCATGTGTAGCTTGTAGCAATGGTTACTTGCTGTTTTGTACCCAATGAAATGTGTAAAAGTAAACTTATTTCGATAGTGTTCTTTTCATTAAATCATATTAACGATTAATACTAATTTCATTGGTAAAACAATCTGTTACTTGACTGcgtatgtgtgagtgtatgtatgcACGCGTATATAAAAACCAAActttgtttttcaacattttgcaCATCACCTGTTTGCCAAGTAGCTCTGTGCATTTGCTTTCAATGTCATGAAGTATTTTAAAACGGAATATATTTTGCAAGCATAACTGATAACGTGGGGAAGTGTAACAATCATCAATTGTGTCATTTTTGGAAGCTGCCACTGGATTCACTGTAATATATTTTCTTGTCAATGTACATTGTCAGCTCAGTGTATTTTAGTTTGACTATAACTTGGCAAAGATGACATTGGAGGTTTACCTGGTTATGTTCTAACAGTAGCATATATGGCATTGGGTGGCCAACCCCCTTTTCTCATGTTTCATGATAAAGACAGACAAGGAACgtaatgtagtaaacaaaaaaactACTAGGAAAGCCACATAATTTGAACCCATTGGGACTCAAGGTGTAAAGACCTGTTCAGTTCTTCTGTTGTGCTTGTTCACCTGTAGAGTTGAAAGGCCAAAGGAGTTAGAAGGCTACGATGGCAGGCCTATGAAAGCACAAACACCCCTATCAGGGTTTTGGAACTACTTTGGTCTTTGCCCTTACCAGCCAGGATCTACAAAGCATGGTAATCTATTTGGCTGAAGTCGATCACCAGCAGCACTGAAATTGGGGGGAAGATCCGCCTTGAGAatcacagctgtgtgtgtgtgtgtacactgtgttTATGTACGTATGTAGCATTTCAtcgttatttttttacattttcttcgGTAGGTATTCGGTAGGTTTTGTATATtttttcaacatagacaatccTTTTGTGGATTATCCAAGGAAATTATGTtatgatttgtaaaaaaaaaaaaaaaaatgttcatcGTAAACTTGGTGTGCATGTAtggggggtggtgtttgggaaTCAGATCTCACCATCTTTGGactcccgagtgacgcagtggtctaaggcactgcatctcagtgcttgaggcgtcactacagacaccctggttcgattccaggctgtatcacaaccggccgtgattgggagtcccatagggcggcgcacagttggcccaacgtcgtctgggttaggccggtgtaggccgtcagtaaagaatacattcttatttacaatgacttgcctagtttaataaataCTCATCTTTGGTGTGAGTGTGTTTTCAGCTTGtaggacctacagtacatgttttAGTAGAGGCATGATGAGAGAACAGAATTCTAATTTTCATCTTGGCCCAGGTTTAGCTTACAGATGTTTGCCTACAGGTTGATGTAGATGCATGCATTAGAACCCCTGCTGCATTTACACAAGTTGATTTGCTATCGATAGTCACAATGGTGGTGTGAAAAAATAACTTTCAATGTGTTATAAAATGCAATAGCTGATATTTTATTTCATAGCTTTTAAATTGTAATTGTTTGCTTCTTTTGCAGGGGTCTCTGTTTTTCTGAGGTTGAGGTACATCTAATTAAATGAAAAATAAACTGTACCATGAAGGATA

Function

GO:

id name namespace
GO:0030246 carbohydrate binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1194748 lncRNA upstream 20152 21785842 ~ 21786052 (+) True G1048407
TU1194740 lncRNA upstream 35917 21770086 ~ 21770287 (+) True G1048399
TU1194712 lncRNA upstream 37234 21765717 ~ 21768970 (+) True LOC110537190
TU1194729 lncRNA upstream 72431 21733555 ~ 21733773 (+) True G1048388
TU1194598 lncRNA upstream 79756 21723297 ~ 21726448 (+) True G1048268
TU1194718 lncRNA downstream 1452 21827713 ~ 21828270 (+) True G1048377
TU1194761 lncRNA downstream 9465 21835726 ~ 21835994 (+) True G1048419
TU1194782 lncRNA downstream 24527 21850788 ~ 21851253 (+) False G1048429
TU1194783 lncRNA downstream 24527 21850788 ~ 21851359 (+) True G1048429
TU1194777 lncRNA downstream 25287 21851548 ~ 21858830 (+) True LOC110537199
XM_036937200.1 mRNA upstream 215 21796345 ~ 21805989 (+) False LOC110537195
XM_021623046.2 mRNA upstream 215 21796419 ~ 21805989 (+) False LOC110537195
XM_036937202.1 mRNA upstream 215 21796434 ~ 21805989 (+) True LOC110537195
XM_036937198.1 mRNA upstream 28472 21774434 ~ 21777732 (+) False LOC110537192
XR_005034913.1 mRNA downstream 25857 21852118 ~ 21858829 (+) False LOC110537199
XM_021623050.2 mRNA downstream 27366 21853627 ~ 21862294 (+) False LOC110537199
XM_021623049.2 mRNA downstream 30445 21856706 ~ 21862294 (+) False LOC110537199
XM_021623053.2 mRNA downstream 69062 21895323 ~ 21936857 (+) False LOC110537201
XM_021623054.2 mRNA downstream 69062 21895323 ~ 21936857 (+) False LOC110537201
TU1193645 other upstream 1114462 20690827 ~ 20691742 (+) False LOC110537158
TU1193644 other upstream 1114935 20690827 ~ 20691269 (+) False LOC110537158
TU1193125 other upstream 1294685 20509269 ~ 20511519 (+) True G1046929
TU1193001 other upstream 1512353 20282886 ~ 20293851 (+) True G1046823
TU1192894 other upstream 1658790 20144179 ~ 20147414 (+) True G1046724
TU1194759 other downstream 6833 21833094 ~ 21834812 (+) True G1048417
TU1195985 other downstream 699680 22525941 ~ 22526232 (+) True G1049502
TU1196129 other downstream 902669 22728930 ~ 22737666 (+) True G1049629
TU1198209 other downstream 2351169 24177430 ~ 24177934 (+) True G1051534
TU1199317 other downstream 3526323 25352584 ~ 25356008 (+) False LOC110537258

Expression Profile