RNA id: XM_021623070.2


Basic Information

Item Value
RNA id XM_021623070.2
length 2400
RNA type mRNA
GC content 0.44
exon number 9
gene id LOC110537207
representative False

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 22071961 ~ 22115724 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGCAtgcctgcctcctctccctctcatgtctttgtctctctgatCTTTCATTCTTTGTTGCATTTCTTTGCTTTCCTCCATTTCAGTTtacctcccctcttccctctctacctctctcaccatGACTCCCAGTGTCCTTCCCTCTAGGTCTTCTGTGGATCTTGTGCAACCTCACTTtcccgctctttctttctctctgtgtgtctctctctccccctaaatTCCCTTTTGTCTTAGTTTGTGACCCACTGAACCTCCTTTCTCTTTATCCCATGCATGCATAGAAACACATGCACATGCAAACacaaacgcatacacacacaccacacagacatactAACACAGACACGGTTAGACACACAACGAGAGGGACTTTACCATGGGGAACTCAGTCAAATCTCACTTCTCCAAGAAGgaccagaagaagaactaCAGAGCAGTGCAGTCCTGTGAGGAGGGGACTGGGGGGGGCTATCTTGAGCCACTAGTTGCTATGGCTCAGAATGGAGGCAACATGCACAACGTACTGGGGCCTGCCTGCATCTTTCTACGCAAGGGCTTCGCTGAGAGCCGGCAGGCTAAGAAGGATAGAGAGCTGAGGCCGGAGGAGATGGATGAGTTGCGCGAGGCTTTTAAAGAGTTTGACAAAGACAAAGATGGCTTCATTGGCTGTAAAGACCTAGGCAACTGCATGAGAACCATGGGCTACATGCCTACTGAGATGGAGCTGATAGAACTGAGCCAGCAGATCAACATGAACTTGGGAGGACATGTGGACTTTGAGGACTTTGTGGAGTTGATGGGGCCCAAACTCCTGGCAGAAACAGCCGATATGATCGGGGTCAAGGAGCTAAGGGATGCTTTCAAAGAGttTGACACAAATGGTGATGGCCAGATCAGCACATCTGAACTCAGAGAAGCAATGAAGAAACTTTTAGGTCAACAGGTTGGTCATAGAGACCTTGAGGACATCCTACGGGACATTGACCTGAATGGAGACGGCCATGTCGACTTTGAAGAGTTTGTGCGCATGATGTCTCGCTGAGTGTAGGTCATGATACCGACTGGTTCCTTTCCTGGtaagagaggatgagaaggagaagaagaagtgaaggagaggcagagatggCAGCGCCCTTACCGACAGACCTCTTACCTCAGACTTCTGAACTACAGAAGGAGAAAACGACATATCAACCCCGCTCTGCTACTGCCACATCTGAAGACATGCACAGAAGCTGAAGGAACAACATCCGTGATCATGATGATGCTGTTACTGCTGTCTCTAAGAGCAAAACAGAACAACAGCCAGCCTCCCACAGTTTTACATTGTACATTTCAGATATTAGAGAAAACATATCTAGGTGTTTACAGGGTCTAAAGAGCAATGTGATGTTTGAGCTACTTACACTCATAGCAATGGTTGGTTAATGCTGTAGCAAAGTAAAGGAGACACATTTACATTTTCAACACTTTCTTACTTATGCCAACGTCTCCTATAACTAGTCTAAAGCAGCATATTCCCCTCTGGGGCTTTGGACTCCTAAAATAAACTTTTTAGTGGCAATATTATTATATCAGTGTACCAACTCTCAAAATATGtattgtttgtgttgtgtgtgcgttcatgtgtgtttgtgcacctcaATTATCCTTTACTGTAAGATTTCATATGTCTTAAGCTACTGTACAGTTAGTGTCAAACCCATGGCATATGCTGGCTCTATCTTGAATTACATGCCATGTATTACCACGGATGCACTTTTTTAGATTTTATCATTATCAACACATATCGAGTTACATTATACGATTTTTGAACATAGATGGGTACCTGCTTTGATAAATGGAAGATCTGTTTCTTGAGAACCGAATACTCTGGGAAATGCGGTAGCAATCATAATTAATTGGTTTCTTCGGGCCAACCCAATACACAGTTTTGCACATTGTTTTGCATGAATACTAAGAATGCATGCTCCACTTATGATTTAACCAGACACACTGTCACTCCCCATGCAAATAAACAATGTGCACCACAAgcaaacatacacacagtatATTATTGTGGTGATCAACATAACActgaaacctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtactgatgagagtgtgtatgtatgagtgCTTGTGTATTTTTTTGTGCGAGTCTCCCTTAGGCAGTCTTATTTGTGACTTTGCATGTGTCTTACTTGTGTGATTCTATGCATGCCAAATAGTAAAACAATTTGTAGCATAGTAGATGAGAATAAAGATTTTTGTTGcaaaaacactgtgtgtgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1194873 lncRNA upstream 50949 22041104 ~ 22043798 (+) True G1048513
TU1194800 lncRNA upstream 156547 21937315 ~ 21938200 (+) True G1048443
TU1194805 lncRNA upstream 157585 21936944 ~ 21937162 (+) True G1048447
TU1194777 lncRNA upstream 235917 21851548 ~ 21858830 (+) True LOC110537199
TU1194783 lncRNA upstream 243388 21850788 ~ 21851359 (+) True G1048429
TU1195709 lncRNA downstream 157296 22273018 ~ 22290074 (+) True G1049249
TU1195793 lncRNA downstream 373513 22489235 ~ 22490285 (+) True G1049329
TU1195965 lncRNA downstream 399682 22515404 ~ 22515603 (+) True G1049482
TU1195973 lncRNA downstream 404449 22520171 ~ 22520381 (+) True G1049490
TU1195983 lncRNA downstream 409452 22525174 ~ 22525504 (+) True G1049500
LOC110536818 mRNA upstream 56715 22029258 ~ 22038032 (+) True LOC110536818
XM_021623055.2 mRNA upstream 157890 21895323 ~ 21936857 (+) False LOC110537201
XM_021623075.2 mRNA downstream 6989 22122711 ~ 22133603 (+) True LOC110537208
XM_021623076.2 mRNA downstream 35873 22151595 ~ 22157870 (+) True LOC110537209
XM_036937210.1 mRNA downstream 49708 22165430 ~ 22203378 (+) True LOC110537210
XM_036937214.1 mRNA downstream 179265 22294987 ~ 22337212 (+) False LOC110537214
XM_036937215.1 mRNA downstream 179265 22294987 ~ 22337212 (+) False LOC110537214
TU1194759 other upstream 259935 21833094 ~ 21834812 (+) True G1048417
TU1193645 other upstream 1403005 20690827 ~ 20691742 (+) False LOC110537158
TU1193644 other upstream 1403478 20690827 ~ 20691269 (+) False LOC110537158
TU1193125 other upstream 1583228 20509269 ~ 20511519 (+) True G1046929
TU1193001 other upstream 1800896 20282886 ~ 20293851 (+) True G1046823
TU1195985 other downstream 410219 22525941 ~ 22526232 (+) True G1049502
TU1196129 other downstream 613208 22728930 ~ 22737666 (+) True G1049629
TU1198209 other downstream 2061708 24177430 ~ 24177934 (+) True G1051534
TU1199317 other downstream 3236862 25352584 ~ 25356008 (+) False LOC110537258
TU1199636 other downstream 3714039 25829761 ~ 25834466 (+) True LOC110537260

Expression Profile