RNA id: XR_005034914.1


Basic Information

Item Value
RNA id XR_005034914.1
length 481
RNA type mRNA
GC content 0.47
exon number 3
gene id LOC118937646
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 22467396 ~ 22477003 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGAGAAGAAGCGCATAAACATCTCGTTGCCGCTGGAGATGACTGGCGAGGGTTTCTTGATGCCACAGAAGCGTCCCAGACTAGGGGCCCGGCCATCCTGCCCATCGTAGATCTCCAGGTGGTCGTAGGCACACTCCAGAATTCTAGGTGGCAAAGCTAAAAGGGGAGAAGATCGGGAGAAAAAAGACGGATTGGATCCTGAAAAAGAGACCGCAATAATTGgacctgagccctaggaccatgcctcaggaccacCTGGCATGACGACTCCTCGCTGTcccctgcattgcttgctgtttggggttttaggctgggttgctgtacagcactttgatatatcagctgatgtaagaagggctatataaatacatttgatttgaaaatttgatttgaatctgATATGCTTTTCACCTAGTTTTTGTCCTTTAAAATGTTTCATTTATTTCATTCTATGACCCCAAACCCAACACCTAACTGTTCTG

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0005509 calcium ion binding molecular_function
GO:0004222 metalloendopeptidase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1195902 lncRNA downstream 23485 22443490 ~ 22443911 (-) True G1049429
TU1195901 lncRNA downstream 24949 22442220 ~ 22442447 (-) True G1049428
TU1195898 lncRNA downstream 27657 22439253 ~ 22439739 (-) True G1049425
TU1195836 lncRNA downstream 162414 22304601 ~ 22304982 (-) True G1049366
TU1195657 lncRNA downstream 212200 22254975 ~ 22255196 (-) True G1049212
TU1195955 lncRNA upstream 27356 22504359 ~ 22504636 (-) True G1049473
TU1195975 lncRNA upstream 43765 22520768 ~ 22520982 (-) True G1049492
TU1195984 lncRNA upstream 48109 22525112 ~ 22525625 (-) True G1049501
TU1195986 lncRNA upstream 48914 22525917 ~ 22526146 (-) True G1049503
TU1195989 lncRNA upstream 53817 22530820 ~ 22531096 (-) True G1049506
XM_036937219.1 mRNA downstream 68411 22361779 ~ 22398985 (-) True LOC110537215
XM_036937213.1 mRNA downstream 173672 22272041 ~ 22293724 (-) True LOC110537213
XM_036937212.1 mRNA downstream 173676 22272041 ~ 22293720 (-) False LOC110537213
XM_021623080.2 mRNA downstream 177288 22272041 ~ 22290108 (-) False LOC110537213
XM_021623079.2 mRNA downstream 196860 22267331 ~ 22270536 (-) True LOC110537212
XM_036937220.1 mRNA upstream 12202 22489205 ~ 22494113 (-) False LOC110537217
XM_036937221.1 mRNA upstream 12202 22489205 ~ 22494114 (-) True LOC110537217
XM_036939494.1 mRNA upstream 19734 22496737 ~ 22497165 (-) True LOC110536819
XM_021623091.2 mRNA upstream 63029 22540032 ~ 22546807 (-) False LOC110537218
XM_021622496.2 mRNA upstream 130855 22607858 ~ 22628060 (-) False LOC110536820
TU1195860 other downstream 126887 22337086 ~ 22340509 (-) True G1049389
TU1195524 other downstream 342492 22117062 ~ 22124904 (-) True G1049089
TU1195414 other downstream 524400 21938446 ~ 21942996 (-) True G1048995
TU1195415 other downstream 529196 21937331 ~ 21938200 (-) True G1048996
TU1195432 other downstream 535611 21931183 ~ 21931785 (-) True G1049013
TU1196162 other upstream 67175 22544178 ~ 22546657 (-) True LOC110537218
TU1196151 other upstream 130858 22607861 ~ 22641599 (-) False LOC110536820
TU1196153 other upstream 130858 22607861 ~ 22641599 (-) True LOC110536820
TU1196240 other upstream 212158 22689161 ~ 22689597 (-) True G1049722
TU1197008 other upstream 766634 23243637 ~ 23244270 (-) True G1050429

Expression Profile