RNA id: XM_036939494.1



Basic Information


Item Value
RNA id XM_036939494.1
length 429
RNA type mRNA
GC content 0.61
exon number 1
gene id LOC110536819
representative True

Chromosome Information


Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 22496737 ~ 22497165 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ATGGCATTGCCCAGCTTGCAGCACTATGTGGACAGGTTGATGTTTGAGGGCCAGTGTGCAGACTGTGCGTTGGTGAACGTCAGTACCCGCAGGGTGATGGCGGCCACTCCAGGGGGATCCCTGGAACATCTGACCCGGCGTGAGATTAGGAGGATACTGGCCAGGAAGAGAGAGGCCATCCAGACCCAGGGAGTGAGCCTGGGGGGGCTGCGCTGTGCCCTGGTGAGGGACAACATGGTCACCCCAGGGGAAAGGTCAATGGACCTGCGCACCAAGCACAGGCCCAGCCGGGGTGTGGCCGTGCGCCGGACACGCCATCTCCTCCTGGTGCTCCTCGGCAACAGGGGGATCAGCAGCGGATTCCTCAATCACAAGGCCTATCAGATGGCTGCATGCCTTCGCAACGCAGGATCATCACAACTTGCTTGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1195902 lncRNA downstream 52826 22443490 ~ 22443911 (-) True G1049429
TU1195901 lncRNA downstream 54290 22442220 ~ 22442447 (-) True G1049428
TU1195898 lncRNA downstream 56998 22439253 ~ 22439739 (-) True G1049425
TU1195836 lncRNA downstream 191755 22304601 ~ 22304982 (-) True G1049366
TU1195657 lncRNA downstream 241541 22254975 ~ 22255196 (-) True G1049212
TU1195955 lncRNA upstream 7194 22504359 ~ 22504636 (-) True G1049473
TU1195975 lncRNA upstream 23603 22520768 ~ 22520982 (-) True G1049492
TU1195984 lncRNA upstream 27947 22525112 ~ 22525625 (-) True G1049501
TU1195986 lncRNA upstream 28752 22525917 ~ 22526146 (-) True G1049503
TU1195989 lncRNA upstream 33655 22530820 ~ 22531096 (-) True G1049506
XM_036937221.1 mRNA downstream 2623 22489205 ~ 22494114 (-) True LOC110537217
XM_036937220.1 mRNA downstream 2624 22489205 ~ 22494113 (-) False LOC110537217
XR_005034914.1 mRNA downstream 19734 22467396 ~ 22477003 (-) True LOC118937646
XM_036937219.1 mRNA downstream 97752 22361779 ~ 22398985 (-) True LOC110537215
XM_036937213.1 mRNA downstream 203013 22272041 ~ 22293724 (-) True LOC110537213
XM_021623091.2 mRNA upstream 42867 22540032 ~ 22546807 (-) False LOC110537218
XM_021622496.2 mRNA upstream 110693 22607858 ~ 22628060 (-) False LOC110536820
XM_036937223.1 mRNA upstream 110693 22607858 ~ 22638785 (-) False LOC110536820
XM_036937222.1 mRNA upstream 110693 22607858 ~ 22638787 (-) False LOC110536820
XM_036937228.1 mRNA upstream 110693 22607858 ~ 22641488 (-) False LOC110536820
TU1195860 other downstream 156228 22337086 ~ 22340509 (-) True G1049389
TU1195524 other downstream 371833 22117062 ~ 22124904 (-) True G1049089
TU1195414 other downstream 553741 21938446 ~ 21942996 (-) True G1048995
TU1195415 other downstream 558537 21937331 ~ 21938200 (-) True G1048996
TU1195432 other downstream 564952 21931183 ~ 21931785 (-) True G1049013
TU1196162 other upstream 47013 22544178 ~ 22546657 (-) True LOC110537218
TU1196151 other upstream 110696 22607861 ~ 22641599 (-) False LOC110536820
TU1196153 other upstream 110696 22607861 ~ 22641599 (-) True LOC110536820
TU1196240 other upstream 191996 22689161 ~ 22689597 (-) True G1049722
TU1197008 other upstream 746472 23243637 ~ 23244270 (-) True G1050429

Expression Profile