RNA id: LOC118937648


Basic Information

Item Value
RNA id LOC118937648
length 1364
RNA type mRNA
GC content 0.48
exon number 1
gene id LOC118937648
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 22624544 ~ 22625907 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAAATTTGAATAAAAAAGTGATGGCAGGAAATCCCCCGAGTTATTACTGGAGAAACCTCTGGACAGTGAAAAGCAGTCAGTATTCCACCTGCTGCAGTCAGTATTCCACCTGCTGCAGTCAGTATTCCACCTGCTGCAGTCAGTATTCCATCTGCTGCAGTCAGTATTCCACCTGCTGCACTCAGTATTCCACCTGCTGCAGTCAGTATTCCACCAGCTGCAGTCAGTATTCCACCTGCTGCAGTCAGTATTCGCACCTGCTGCAGTCAGTATTCCACCTGCTGCAGTCAGTATTCCACCTACTGCAGACAGTATTTCACCTACTGCAGACAGTATTTCACCTGCTGCAGTCAGTATTCCACCTGCTGCAGTCAGTATTCCACCTGCTGCAGTCAGTATTCCACCTGCTGCACTCAGTATTCCACCTGCTGCACTCAGTATTCCACCTGCTTCTTACGGCTGTAGATGGTGGACAACCTGAGAAATCAGAGACTCCTTCTGTTCTTATTAATATACTAGATGTCAATGGCAATGCTCCAGTACTTGACCAGCTAATGAAAACAGCTAGTTTGTTGGAAAACGCTCCACCAAGCACATTATTGACTAAACTCATGGCATCTGGCTCTGATTCTGGTCTTAATGTGGAGATATCTTAACTCTTTAGTAAGTACTGATCCGAGtgaaaggagaggtggagtaTGAAATGGCTGACATTTATGACATCACTGTGCATGCCAGAGCCCCCGCCATGGAAGGCTCCTGTCACATTCAAGTCAAAATCAATGACAAGAACGACAACAACCCAAAGATAATCATAAATGCATGATCTAAAGTGGTCCAGGAGGACGTATAATCAGACACTGTTATAGCCTTCATCACTTGTAGAAATGGGGAGGTTGACGTCCGCATTCCCTCTGATCTTTAATTTTGGTTGATACCCCCTCTGAGGAGCACTATGCCCTGGTTACAGATGGCCCTTTGGACCGAGAGGCTGTGACTGAATACACCATCACAGTGACAGCCACAGACTCCGGCTCCCCCCCTCGCACAACAGTCCATTGTGGTCGCTCTTCCAGGTGTAAATGACAACGACCCCTCTTCTCCCAGTCCTCCTACTCTGTTGATATAGCGGAGAACAATGCCCATGGTGCTCTCATCCTGACTGTGACTCCATTCGACCAGGACCTCGCCCAGAAcgcccacctctccttctccatcctggaTGTTGAGGTGCAAGGCTCGGCCTTGTCCTCTTTGGTCTACATAAACTCTGAGAACGGCGACCTGCATGCCATTCGTGCCCTCGACCATGAGCAGGTGAATGTGTTCTAGGTGCAGAGCTCCAATGTGACCATGCATTTATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1196181 lncRNA downstream 57634 22561152 ~ 22566910 (-) True G1049666
TU1196172 lncRNA downstream 70974 22553367 ~ 22553570 (-) True G1049658
TU1196170 lncRNA downstream 73342 22550926 ~ 22551202 (-) True G1049656
TU1196139 lncRNA downstream 84676 22539592 ~ 22539868 (-) True G1049637
TU1195993 lncRNA downstream 91290 22533019 ~ 22533254 (-) True G1049510
TU1196228 lncRNA upstream 46857 22672764 ~ 22673062 (-) True G1049711
TU1196231 lncRNA upstream 49535 22675442 ~ 22676180 (-) True G1049713
TU1196241 lncRNA upstream 63849 22689756 ~ 22689994 (-) True G1049723
TU1196244 lncRNA upstream 74691 22700598 ~ 22700972 (-) True G1049726
TU1196271 lncRNA upstream 134245 22760152 ~ 22760393 (-) True G1049753
XM_021623091.2 mRNA downstream 77737 22540032 ~ 22546807 (-) False LOC110537218
XM_036939494.1 mRNA downstream 127379 22496737 ~ 22497165 (-) True LOC110536819
XM_036937221.1 mRNA downstream 130430 22489205 ~ 22494114 (-) True LOC110537217
XM_036937220.1 mRNA downstream 130431 22489205 ~ 22494113 (-) False LOC110537217
XR_005034914.1 mRNA downstream 147541 22467396 ~ 22477003 (-) True LOC118937646
LOC118937649 mRNA upstream 13082 22638989 ~ 22641219 (-) True LOC118937649
LOC118937813 mRNA upstream 33708 22659615 ~ 22662980 (-) True LOC118937813
XM_036937230.1 mRNA upstream 37376 22663283 ~ 22665618 (-) True LOC118937647
LOC110537219 mRNA upstream 39755 22665662 ~ 22670678 (-) True LOC110537219
XM_021623093.2 mRNA upstream 67792 22693699 ~ 22714042 (-) False LOC110537220
TU1196162 other downstream 77887 22544178 ~ 22546657 (-) True LOC110537218
TU1195860 other downstream 284035 22337086 ~ 22340509 (-) True G1049389
TU1195524 other downstream 499640 22117062 ~ 22124904 (-) True G1049089
TU1195414 other downstream 681548 21938446 ~ 21942996 (-) True G1048995
TU1195415 other downstream 686344 21937331 ~ 21938200 (-) True G1048996
TU1196240 other upstream 63254 22689161 ~ 22689597 (-) True G1049722
TU1197008 other upstream 617730 23243637 ~ 23244270 (-) True G1050429
TU1198735 other upstream 1928790 24554697 ~ 24555000 (-) True G1052040
TU1198799 other upstream 1978373 24604280 ~ 24607820 (-) True LOC118936414
TU1201112 other upstream 2997972 25623879 ~ 25624637 (-) True G1054211

Expression Profile