RNA id: LOC110537227


Basic Information

Item Value
RNA id LOC110537227
length 1268
RNA type mRNA
GC content 0.52
exon number 3
gene id LOC110537227
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 22879185 ~ 22881924 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTCTGGTCTGAATAGTTTTTTTGTCACCGTCTTTCTCCATTCAGATTTGAGACCATGCACCATAGAAAAACTACTGTGCGAGAGAAGGGTCGTCGGCAGGCTATCCGTGGACCAGCCTTCATGTTCAGTCAGCGGGGCACCAGCCTCACTTCAGAGGCAGGGCGCTTCCTAGACTCTGCTGAGTATGGGAACGTCCCAGTGGTGCGTAAGATATTGGAAGAGTCCAAGACTCTCAACGTCAACTGTGTGGACTACATGGGCCAGAATGCACTGCAGTTGGCCGTGGGTAATGAGCACTTGGAAGTGACAGAACTACTGCTGAAGAAGGAGGGTCTGGCTCGTGTGGGCGATGGCCTCCTCTTGGCCATCAGTAAGGGAGGGCTATGTGCGTATCGTAGAGGATATCTTGGCCCACCCTGCATTCGGAGGTGGGCTTCGCCTCACTTTAAGCCCCCTGGAGCAGGAGCTACAAGATGATGACTTTTATGCCTACGACGAAGACGGCACACGTTTCTCCCATGACGTGTCCCCGGTCATCCTGGCTGCACACTGCCAGGAGTACGAGATAGTGCACACTCTGTTGATGAAGGGAGCCCGTATCGAGAAGCCCCATGACTACTTCTGTAAGTGTAGCGGGTGTCATGACAAGCAGTGCCGTGACTCGTTCAGCCACTCCCGCTCCAGGATGAATGCTTATAAAGGGCTAGCCAGCGCTGCCTACCTGTCCCTGTCTAGTGAGGACCCTGTATTCACCGCTCTGGCGCTCAGCAACGAGCTGGCTCTCCTCGCCAACATCGAGACTGAGTTCAAGaATGACTACAGGAAGCTATCCATGCAGTGTAAGGAATTTGTGGTGGGAGTGCTTGACTTATGCAGAGACACGGAGGAGGTGGAGGCCATTTTGAATGGGGATGTGGACCAAACTCTGCCCGGTGATCACAGTCGACCCTGCCTCAGTCGGGTCAAACTGGCCATTAAGTACGAGGTCAAGAAGTTTGTGGCCCATCCTAACTGCTAGGGTGAAATGCTGGATAGTCCTGGGAGTGGCTATTGGCCTTCCTTTCCTCAATAGCATACTGGATAGTGCCCTGCAGTAAGGTACATACACAATCCCCTTTCTATTGTCTTCTCAGATTCACTCATTAACACAtgatccaggctgcatcacatccagccgtgattgggagtcccacagggcgacacacaattgtcccagcgtcgtccgggtttgtccgtcattgtaaaataagaatttgttcttaactga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1196722 lncRNA downstream 50078 22828245 ~ 22829107 (-) False G1050165
TU1196725 lncRNA downstream 50078 22828245 ~ 22829107 (-) True G1050165
TU1196711 lncRNA downstream 56746 22822216 ~ 22822439 (-) True G1050157
TU1196710 lncRNA downstream 57467 22821516 ~ 22821718 (-) True G1050156
TU1196709 lncRNA downstream 57699 22821041 ~ 22821486 (-) True G1050155
TU1196792 lncRNA upstream 109086 22991010 ~ 22992778 (-) True G1050227
TU1196907 lncRNA upstream 220748 23102672 ~ 23121201 (-) True G1050335
TU1196939 lncRNA upstream 263328 23145252 ~ 23163148 (-) True G1050364
TU1196961 lncRNA upstream 292484 23174408 ~ 23174772 (-) True G1050382
TU1196999 lncRNA upstream 349012 23230936 ~ 23231137 (-) True G1050420
XM_021623106.2 mRNA downstream 9217 22862262 ~ 22869968 (-) False LOC110537225
XM_021623107.2 mRNA downstream 9217 22862262 ~ 22869968 (-) True LOC110537225
XR_002475589.2 mRNA downstream 19552 22823888 ~ 22859633 (-) True LOC110537224
XM_021623104.2 mRNA downstream 19553 22823888 ~ 22859632 (-) False LOC110537224
LOC118937814 mRNA downstream 82452 22792108 ~ 22796733 (-) True LOC118937814
XM_036939495.1 mRNA upstream 555794 23437718 ~ 23438711 (-) True LOC118937815
XM_036939497.1 mRNA upstream 571553 23453477 ~ 23454855 (-) True LOC118937816
XM_021622498.2 mRNA upstream 575659 23457583 ~ 23460327 (-) True LOC110536822
XM_021623113.2 mRNA upstream 837174 23719098 ~ 23867582 (-) False LOC110537230
XM_036937242.1 mRNA upstream 837174 23719098 ~ 23951743 (-) False LOC110537230
TU1196240 other downstream 189588 22689161 ~ 22689597 (-) True G1049722
TU1196151 other downstream 237586 22607861 ~ 22641599 (-) False LOC110536820
TU1196153 other downstream 237586 22607861 ~ 22641599 (-) True LOC110536820
TU1196162 other downstream 332528 22544178 ~ 22546657 (-) True LOC110537218
TU1195860 other downstream 538676 22337086 ~ 22340509 (-) True G1049389
TU1197008 other upstream 361713 23243637 ~ 23244270 (-) True G1050429
TU1198735 other upstream 1672773 24554697 ~ 24555000 (-) True G1052040
TU1198799 other upstream 1722356 24604280 ~ 24607820 (-) True LOC118936414
TU1201112 other upstream 2741955 25623879 ~ 25624637 (-) True G1054211
TU1201136 other upstream 2775345 25657269 ~ 25659005 (-) True G1054232

Expression Profile