RNA id: XM_036939497.1


Basic Information

Item Value
RNA id XM_036939497.1
length 812
RNA type mRNA
GC content 0.39
exon number 3
gene id LOC118937816
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 23453477 ~ 23454855 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agaagcaataaaactggccttctttagactagttgagtatctggagcatcagcatttgtaattacaaattacaaacttcagaagctttTTCAAACCTCCaatacaagttttacatttcctaaCACTAAATGCTTTGGTGGTGTTTTTGTGTGCCGTGATACTCTGAGGAGGGGGAGTGTATGTTTGTCACTCAGGTATAAATAGAGAGGCAGAGCTCAGAGTTTGTCAGAAGGCTGACCTGACAGAGTCACACACAGGACTAAGCAAGAGCAGGACCTCAGTATTTTGAACCTTTATTACAAATGGAGGAACACGAAGATGCTCAGAACTGTTTTCCAGAACATAACTCTTCTTGCAGAAAGGTTTTGCTATCAACATCGATTTACATAACACTGTACATATTCTTCTTATCAATTGGAGCGGTTACAGTCTTTTTGAACATATTGGTGGTCATCTCTATCTTTCACTTCAAGCAGCTCCACACTCCAACCAATCTGCTCATCCTTTCTCTGGCTGTGGCAGATCTCCTGGTGGGACTGATTGTGATACCAGTAGGGACCGTAGCAATAATGGAATCATGTTGGTTTTTGGGgaaatatttctgtgtgttttatGTCTACATCAGTTATTTCATTCTATCCTTATCTCTCGGCAATTTGGTATTGATATCTATTGACCGCTATGTTGATGGTGGGGGTTCCCTTATTTTACCActCTTTCTGCCATTTGTTAATTCCTTAATTAATCCAATAATTTATGCTTTCTTTTATCCATGGTTCAAAaaacaggacatgtttgtCCTCTACAAATAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1197138 lncRNA downstream 57480 23395796 ~ 23395997 (-) True G1050556
TU1197136 lncRNA downstream 59482 23393773 ~ 23393995 (-) True G1050554
TU1197134 lncRNA downstream 61098 23392119 ~ 23392379 (-) True G1050552
TU1197114 lncRNA downstream 76257 23376946 ~ 23377220 (-) True G1050532
TU1197105 lncRNA downstream 79855 23373409 ~ 23373622 (-) True G1050523
TU1197243 lncRNA upstream 27123 23481978 ~ 23482237 (-) True G1050657
TU1197929 lncRNA upstream 285051 23739906 ~ 23821981 (-) True G1051273
TU1197970 lncRNA upstream 353381 23808236 ~ 23808596 (-) True G1051311
TU1197976 lncRNA upstream 359229 23814084 ~ 23837332 (-) True G1051317
TU1198001 lncRNA upstream 409175 23864030 ~ 23865163 (-) True G1051342
XM_036939495.1 mRNA downstream 14766 23437718 ~ 23438711 (-) True LOC118937815
LOC110537227 mRNA downstream 571553 22879185 ~ 22881924 (-) True LOC110537227
XM_021623106.2 mRNA downstream 583509 22862262 ~ 22869968 (-) False LOC110537225
XM_021623107.2 mRNA downstream 583509 22862262 ~ 22869968 (-) True LOC110537225
XR_002475589.2 mRNA downstream 593844 22823888 ~ 22859633 (-) True LOC110537224
XM_021622498.2 mRNA upstream 2728 23457583 ~ 23460327 (-) True LOC110536822
XM_021623113.2 mRNA upstream 264243 23719098 ~ 23867582 (-) False LOC110537230
XM_036937242.1 mRNA upstream 264243 23719098 ~ 23951743 (-) False LOC110537230
XM_036937240.1 mRNA upstream 264243 23719098 ~ 23951744 (-) False LOC110537230
XM_036937241.1 mRNA upstream 264243 23719098 ~ 23951744 (-) True LOC110537230
TU1197008 other downstream 209207 23243637 ~ 23244270 (-) True G1050429
TU1196240 other downstream 763880 22689161 ~ 22689597 (-) True G1049722
TU1196151 other downstream 811878 22607861 ~ 22641599 (-) False LOC110536820
TU1196153 other downstream 811878 22607861 ~ 22641599 (-) True LOC110536820
TU1196162 other downstream 906820 22544178 ~ 22546657 (-) True LOC110537218
TU1198735 other upstream 1099842 24554697 ~ 24555000 (-) True G1052040
TU1198799 other upstream 1149425 24604280 ~ 24607820 (-) True LOC118936414
TU1201112 other upstream 2169024 25623879 ~ 25624637 (-) True G1054211
TU1201136 other upstream 2202414 25657269 ~ 25659005 (-) True G1054232
TU1201977 other upstream 3525928 26980783 ~ 26982355 (-) True G1055010

Expression Profile