RNA id: XM_021623131.2


Basic Information

Item Value
RNA id XM_021623131.2
length 2784
RNA type mRNA
GC content 0.45
exon number 5
gene id mrm1
representative False

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 24720384 ~ 24725396 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAAATATATAGTTTACTTCCTGGAGGAGGCGGAGTCTTGAAGTCACGCTGGGTAGCACTTGGAGTAATTTAGATGTTGAATGATATTGGTCTGGATTTTTAGAAAAGCATAAACTGAAAATAATTAGCGTAATATGTAGTTTTAATTCAGGCAATATTATATGTTAAAGTTTTGTTTTTACGACGTGGTGTCCAGTTTGCATACGTTTTAACAAGTTTACTAAGTTAGCTACGTTAGCTAGCCTGCCATGCTTTGCCGAAGGACCTCTGCGTGACTGATGCTGGTAGGCGCTCGTTTATTTAATTGCCATAATCCAGTTTTCTCAAAGTTGACCATCCAGTCACAGTAACTGTAGAGCCATTTTATGTATTTTCATTTTAAGAACATGGGGACTTGGAATTTGGCTTGTCGGTGTTCCAGGATGTTCGTCAACAGTAGACTGTTGAATTTGGTATCAGAGTCAGACATGAGAGTGGGTTGTCACTTTGCATCCTACCATTGCGCTAGTGCTCTCCTCTGGCCTAAGGACAGCAGAGTCAAAACAGCTGAGGGGTGGCGAAGCAGTGCTATAACCAGCTCTGGAATGCGACACAGGCCTGCTGTGTCTGAAGTAGGAAAGTACAAATCCGAAGGTCAGTCTGAAGACATAAAGGATGACCCAGAGACTCCAGCCTCCAGAAATGTCTGGAGGAAAGAGACCTCAGTATCCCGGGAGAGGAAGCCCAATACAGACAATAGAGTATCATTTGAGTTCCAGAGAGGTGCCCCAATCAAACGGGAGAGGAAAACAAATACAGACAGCAAAATGTCATCTGAGCTCCGGAAGCTCAGCCTGGATGACTTTCCAGAGGAGTGTGAGAGGCTAGTAAAGGACTCCAGAGAAAGACTGTCCAAAGAAGAACACAGTAATTATGAGACgttgtttggtgtgtctccctgtctcctggCTCTCACCCAGGGCAGAAGGAATGCACACAGGTTGTTTGTGAAGGAGGGTGAGGCCTCTCGTAGGGCCTCCGTACGACAGGTGTGTGAGGAGGCCCATAAGCAGGGTGTGCCAATCCAGAGGGTTAGTAAGAATGACCTGAACAAGATGTGCTCAGGAGGGGTTCACCAGGGCTTATGCCTACAGGCCAGTTTTTTGGGTTTCCTCACTGAGGACAAGACCTCCAAGCCCCCCAGGGACAGCAGTCACATCCCCCTCTGGCTAGTCCTAGATAGAGTGCAGGACCCAATGAACCTTGGTGCCATCCTGCGTTCTGCATATTTTCTTGGGGTGGACGGAGTTGCTAGCAGTCTTCGTAACAGCTGTCCGTTGACACCAGTTGTGAGTAAGGCCAGCTCGGGTGTAATGGAGGTCATGAGAGTGTATGGCTATGATAGCCTCGTAGATATGGTGAAGGTGAAAGTGGCACAAGGCTGGCAGGTTATTGGCACAGTAGGAGCTGAAGCAGAGAACTCCCATGTTCCTGTCATGAAATGTTCCAAATTCCAGATGACCAAACCTACGCTTCTGCTGATGGGTGGTGAAGGGGAAGGTTTGTCCCGGGAGCTGCGTCTGCATTGTGAGGTCATGCTCACCATCCCATCCCGCAGAGATCTACACCCTGGGGTCGAGTCCCTCAATGTCTCTGTGGCTACAGGCATCCTGCTGCACTCTCTGTTGTCGTCCCATAGAGGTGGCCATTGATGCCCGACTAAACTACACAACTCAATGTGTTTACTTTGGAGGCCCTCGCTGGGCTTAATGACTGGATTTACTTAATCAATTAGCATTCAGGATGTCTGAGAGGCCTGGATGGCTGAGTGATTGTGCTGGGGCAGCTGATGTGCcctggccgtgctgctctgcactGCTTTGGACCTTCATGCTAGCTACTTTTCTGAATGGTAACATAGTATGAagtaatgaaaataaataaaaccttGTCTACTCAAAGTTATTGCATTCTTTGCAACTTTCTAATGTTAGCCGCTTGGGTTTTTATGACTTTTGCACATGTGAATGTTGAATccataaaaatacaaatgtttatGAGAATGTGGTCCCTGACGAAAGAGCTACTGTTGTGCTGTTAGAATGGGTCAGTGGCTTCGGTTCAGCTAAATTGATTGCAAATGCTGGTTTTGAATAGAAAGGGAGGGGGGAATGGCCACAGGCTCTGGGCTATTGCTTCTGGTCAGGGGCTGTTTAAAATTGATCATGGGAACAAGCGGCTGCTATTGATAGGCAACATTTGCCCTTTTATCACTGTCAGAATTTAACCAGGGGGCTCATTTATAATTAATGTGCACACATGAatttgtgtgtgtatagttgAAACGTTATCACAAATCTTCAGGATTTATCAGAAGTTTAATTGTTAGGACTTGTTCTTTATTGAGCATATATTTAACAATTGCCTCAGATCATGCTTATGAGTTAGATTTACATATCTGTTTTTGTTACAATCCGAAACTATAATTTCAAGGATTGCATGCTTACATCCATTGAAATATGTTTTTGTGGGAATGTAATTATCTCTACAGTGTAAATACTCTCCTACAACTCTGAACAGTGCAGTGGTAGCTGATGACTCTTTCTATATAATTCATGAATAGCTTTATTATAAGCAGACCCATTTGTTATTTCCCAGTGTGCTGCAGTGTTTGGCCATACAGCCAGAGATGAGGAGGGGCTGTGAATTGGCCTGAGGTACTTGGTTATTTATACAAAAATGTAAActtaacatgtaaagtgttggtcccatgtttcatgagctgaaataaaagatcccagaaaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1198825 lncRNA downstream 84308 24635777 ~ 24636076 (-) True G1052118
TU1198820 lncRNA downstream 86766 24630737 ~ 24633618 (-) True G1052113
TU1198804 lncRNA downstream 103064 24617118 ~ 24617320 (-) True LOC110537240
TU1198800 lncRNA downstream 105672 24612791 ~ 24614712 (-) True LOC110537239
TU1198803 lncRNA downstream 111396 24608310 ~ 24608988 (-) False LOC110537239
TU1200539 lncRNA upstream 123616 24849012 ~ 24851195 (-) True G1053682
TU1200566 lncRNA upstream 169514 24894910 ~ 24895331 (-) True G1053709
TU1200592 lncRNA upstream 199178 24924574 ~ 24947891 (-) True G1053733
TU1200633 lncRNA upstream 311590 25036986 ~ 25038594 (-) True LOC110537246
TU1200676 lncRNA upstream 314702 25040098 ~ 25040375 (-) True G1053815
XM_021623130.2 mRNA downstream 96972 24617183 ~ 24623412 (-) False LOC110537240
XM_036937252.1 mRNA downstream 96973 24617186 ~ 24623411 (-) False LOC110537240
XR_005034921.1 mRNA downstream 103268 24608246 ~ 24617116 (-) False LOC110537239
LOC110536825 mRNA upstream 2603 24727999 ~ 24730374 (-) True LOC110536825
NM_001160514.2 mRNA upstream 9515 24734911 ~ 24737099 (-) True LOC100301685
XM_021623133.2 mRNA upstream 12476 24737872 ~ 24746999 (-) True LOC110537242
XM_021623134.2 mRNA upstream 26210 24751606 ~ 24978957 (-) False LOC110537244
XM_021623135.2 mRNA upstream 26210 24751606 ~ 24978957 (-) False LOC110537244
TU1198799 other downstream 112564 24604280 ~ 24607820 (-) True LOC118936414
TU1198735 other downstream 165384 24554697 ~ 24555000 (-) True G1052040
TU1197008 other downstream 1476114 23243637 ~ 23244270 (-) True G1050429
TU1196240 other downstream 2030787 22689161 ~ 22689597 (-) True G1049722
TU1196153 other downstream 2078785 22607861 ~ 22641599 (-) True LOC110536820
TU1201112 other upstream 898483 25623879 ~ 25624637 (-) True G1054211
TU1201136 other upstream 931873 25657269 ~ 25659005 (-) True G1054232
TU1201977 other upstream 2255387 26980783 ~ 26982355 (-) True G1055010
TU1202178 other upstream 2419814 27145210 ~ 27145493 (-) True G1055199
TU1203334 other upstream 3252630 27978026 ~ 27978436 (-) True G1056225

Expression Profile

XM_021623131.2 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 40.
End of interactive chart.

XM_021623131.2 Expression in each Bioproject

Bar chart with 21 bars.
XM_021623131.2 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 150.
End of interactive chart.