RNA id: XR_002475596.2


Basic Information

Item Value
RNA id XR_002475596.2
length 1984
RNA type mRNA
GC content 0.36
exon number 2
gene id LOC110537288
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 26886033 ~ 26888305 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tatgacgacacaccaaacaaatgtgtttgatggatcacgGAAAAAGAGCAGGAATAGATTTTTGTAGTCTACAGTCCAAGTTATGTCTTCCAAAAGTGCGAATGCTGTCGGGATCCAAAGATTATTCAACTTGAATTAAACAATGATTTCAGTTAAACACATTTTCTTTGCAGGTAGTTATGCATCCGATGAGGCAGCGGATATCAATGTTTTGTGGCATGATTTGGGTGACGGCCTCgtgtttctctctacctcatgCCATTTATCAGAAGCTGCTGTGGTTTGACTTTGGAAAGGTTCGAATGGTGTGTCTGCCCAGCTTTCCACAGCCGTCAGATGTGTTTTGGAAATACTTGGACCTGGCCACGTTTTTCCTCCTCTACTTGTTGCCACTTTCTATCATCTCCGTAGCTTACATTATCGTTGCTAAGAAGCTATGGATGCGTAATTCTATAGGGGATGTCGCCCACAGACAAAGGAAGAAGATGACTCTGAAGATGCTGATGTTGGTGGTGGCTGTTTTTGCTATTGGCTGGTTCCCTTTAAACTGTTATGTGATTTTGGTGTCCAGCCAGGCCATTAACACTAACAATGCTATCTACTTCACCTTCCATTGGTTTGCCATGAGTAGCACCTGTTACAATCCTTGCCTTTCATTTGGCGTTCCAAGAGGGCAGTACATCCATGCTGAGGTTGTCATCTCTATAACTACATAGATTATGTATAAAGATATAGAGGTTAATGCAGAGGTTAACATCTTTCCATAAGATTCTGTCAAGGTTGCACCTATCTCCATTCAGTTGATGTAATTTATAATTAGATCTAGGTCAACCTATAATATGAAATATTAGAGAATAACAGAAGTCTATTTCTTTAAGgggaggtaaaaaataaataataaaatggtGAAGTAATAAAATATTTTGTAAATAATCAGGAAAGAGAATATTAGTGAAACACTTGTATGGATACCATAATGGTAAATAAAACTAATGTGATTTAGCATCTTATGTGTTTTTTCAAAACATGATAGCTTACACAATtcaagtaaaaaaatatttgtttcaaTGTCTATCGTTCTTTTATAGTATAATGTTTGTAAATGTGTAACTGTGCACAGAGTAAACTCGAAACATTCACAAtcattcattagtgcacactatTGCATAGGGCTATTCAATTCTGTCCCTCAAGAGATGTACAGTAGTACTGCTGTTTTTCTTTCCTCCCTGGTAGTTAGTTGATCAGTGTATGTCATTGACCTTAGACTTGACCCACAATGTATTCTCAGGGCTGATTCATTCAGTCCCTGATCAGATGGAGGAAGTAAAACCACCAGTTATGTGTGTGGCCCTCAAGGATTTTTCCTGGCCCTGCCATAGCATTATGCAATTAGTCAGATCTGATGAGCCAAGATTAAGCAAGTGTGAATACTTTTCACTGAATTACCTTTAAAGGAGTACCCATAATGTCATGTCATGATACTTGAAATCATTCAAATAATCTGAGCAGAACTATCTACCAATATAATTGCTTtcccataaaaaaaatattataattgcTTAATTCGATAATTTCATGAATTTATATAATTAGATATATAGATGATCATTAAAAATCACAAAGTTATTGAATGGCTTGGATTGACCAATCAGCATGCCGGATAGAAAAATGTACTTTTCTCACGACACCATCTGCTGGTTGAATCATAGACAATCTTCATGTATAAAATTGGTTGAATATACACTATGAAATAGTGTCAGTGCCAGGGGAATCAGATGTTCTTATGTGTGAGTATGTCATTTGTATTTAAactaaatgtatttgtatttgagtgtttacccgcatttgtaacttgagtccgataattatctgtacaaaacagTTCATCTGATAATACTTGTGGAATATAAAAGTACTTGCTTGTTTTCCAGTTTTTTGAAATACTTTGCAAATAGAACGTATTTCTATTtgaaaactgaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1201923 lncRNA downstream 2591 26881722 ~ 26883442 (-) True G1054957
TU1201917 lncRNA downstream 14358 26870664 ~ 26871675 (-) True G1054951
TU1201886 lncRNA downstream 93405 26792141 ~ 26792628 (-) True G1054920
TU1201876 lncRNA downstream 99567 26779830 ~ 26786466 (-) False G1054914
TU1201877 lncRNA downstream 99567 26779830 ~ 26786466 (-) False G1054914
TU1201930 lncRNA upstream 7462 26895767 ~ 26896834 (-) True LOC110537289
TU1201988 lncRNA upstream 103301 26991606 ~ 26998383 (-) True G1055017
TU1202010 lncRNA upstream 133095 27021400 ~ 27023457 (-) True G1055037
TU1202011 lncRNA upstream 135684 27023989 ~ 27024209 (-) True G1055038
TU1202012 lncRNA upstream 135932 27024237 ~ 27024438 (-) True G1055039
XM_021622396.2 mRNA downstream 22780 26809353 ~ 26863253 (-) False ar-alpha
NM_001124184.1 mRNA downstream 23626 26809670 ~ 26862407 (-) True ar-alpha
XM_036936670.1 mRNA downstream 32838 26809353 ~ 26853195 (-) False ar-alpha
XM_021623209.2 mRNA downstream 146996 26731451 ~ 26739037 (-) True LOC110537285
XM_021623206.2 mRNA downstream 168381 26674978 ~ 26717652 (-) True stard8
XR_005034931.1 mRNA upstream 7460 26895765 ~ 26896913 (-) False LOC110537289
XM_021623220.2 mRNA upstream 43458 26931763 ~ 26943308 (-) False LOC110537292
XM_021623219.2 mRNA upstream 43458 26931763 ~ 26955057 (-) True LOC110537292
XM_021623222.2 mRNA upstream 75668 26963973 ~ 26971550 (-) True LOC110537293
XM_021623226.2 mRNA upstream 84186 26972491 ~ 26973687 (-) True shisa2a
TU1201136 other downstream 1227028 25657269 ~ 25659005 (-) True G1054232
TU1201112 other downstream 1261396 25623879 ~ 25624637 (-) True G1054211
TU1198799 other downstream 2278213 24604280 ~ 24607820 (-) True LOC118936414
TU1198735 other downstream 2331033 24554697 ~ 24555000 (-) True G1052040
TU1197008 other downstream 3641763 23243637 ~ 23244270 (-) True G1050429
TU1201977 other upstream 92478 26980783 ~ 26982355 (-) True G1055010
TU1202178 other upstream 256905 27145210 ~ 27145493 (-) True G1055199
TU1203334 other upstream 1089721 27978026 ~ 27978436 (-) True G1056225
TU1204716 other upstream 1288081 28176386 ~ 28177073 (-) True G1057449
TU1204892 other upstream 1552964 28441269 ~ 28441695 (-) True G1057600

Expression Profile