RNA id: XM_021623222.2


Basic Information

Item Value
RNA id XM_021623222.2
length 4621
RNA type mRNA
GC content 0.47
exon number 6
gene id LOC110537293
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 26963973 ~ 26971550 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTTGCTAAGAGACAGTATGTGGGAGGCTGTCAGAAATGATGAAGGGAGGGGATGATGAATGATATTTAGCTAGCTGTAATGTTCGTGAATAGACTgtaatagctagccagctatatAACTTAAATACATATACTTTACTACAttctgaacaaaacatcacagcTAAGCAATTCGTTAGACAGCTGAGTGCGTTGTATTCGTGAGTCGTTGATTTATCATAATAAATGGTTTTGGAGCTGGCAGTGCCCGCAAATGCAGGCCCATTGCTTCACCGCTCCATCCAGCACATTGAGCGTATTTTCCGGGTGAGGGTCAGCTACGGGTCCGCTGAGTCAAACTGCGACAGCGCAAATGTCAGCACCAGCAATATAATCATAGTTCGTGTCGGAGAGGGCGAGGAAGATGACTGCACCAAGGCAAAAGATTACATAGTGTCCTTAATTTCGCCAGCTCACCGAAAGCGGGAGCGTCTAACGTTGGCTTTACACATACAGCTGGCTGCGCTGAAGTCAGCCATCGAGTATGATTCTCAGGCTGTGGTGGAGGTGAGGGAGCATGTGGTGGACATCTCCGGTGGCGAGAGGAACGTGATGACGGCATGGTCGATGGTGGAGAAGATCAAAATGGAGAAACACCCATGCAGGGAAGAGGCCCCTGAGCTGACTGAGGCCCAGCAGCCCAGTGGGGAGTCTGAGGAGGGAAGCAGCTCAGAGAGCGAGTCAGAGGAGCAGAATCAGCTGCAGCTGAACAGCGGCGGCTGTAAGAGGAAAGAGCCCTTCAGTGCCACCAAGCCTCACCGGCAGCTCTGTCGCTCTCCATGCCTGGACCGGCCCAGCTTCTCCCAGAGCTGCACTCTACCAGAGCTCCGCATTGAAGACACCAAGGCCACTGCAGTGCTTAAACATGCCAGTGACAAGGAGTACCAAACCAAGATGGAGTTTGCCTTGAAGCTGGGATACTCAGGTGAACAGGTGGAGACCGTGCTGAACAAGTTAGGGGCTGCTGCCCTTATCAATGACATTCTGGCTGAGCTTGTAAGGCTTGGTAATAAAGGAGAACCGGAGGTTCAAGCCAGCAGTAACACCGGCACGTTCGTCTCCCGTGGAGGCCCCTGTGTCAAAGAGGCTGTCAGTCCGGAGGTGTCACTTGAAGATGATTCTGTGGATCCTTATGATAATCTCAGGCCTATCGTCATTGATGGATCGAATGTGGCGATGAGTCATGGAAACAAAGAGGTGTTCTCTTGCCTTGGCATCCAATTGGCTGTTGATTGGTTTGTGGAGAAAGGACACAAAGACATCACAGTGTTTGTTCCTGCCTGGAGGAAAGAGCAGTCGAGACCTGACGCCCCCATTACAGACCAAGACATTTTGCGGAAGCTAGAGAAAGAAAAGATCCTAGTGTTCACCCCATCTAGAAGAGTCCAAGGAAGGAGAGTGGTGTGCTATGATGATCGCTTCATAGTGAAGCTGGCCTGTGACTCTGATGGCATTATTGTGTCAAATGACAACTACAGGGACTTACAGAATGAGAAGCCAGAGTGGAAGAAGTTCATAGAGGAGCGACTGCTGATGTACTCATTTGTCAATGATAAATTCATGCCACCTGATGATCCTTTAGGAAGACATGGTCCAAGTTTAGAGAATTTCCTCCGCAAGCGTCCTGTTGTTCCAGAGCACAAAAAGCAACCCTGTCCATATGGGAAAAAATGCACTTATGGACATAAGTGCAAGTACTATCACCCAGAGCGTGCAAACCAGCCTCAGCGGTCAGTGGCTGATGAACTGAGAGCGTTTGCCAAGTTGTCTGCTGTAAAGACAATGAGCGAGGGGGCCCTGGCCAAGTGTGGCACTGGACCCACCACAGCTAAGGGGGACAGTGGCTCTGAGGCTAAACGTGTGGCCCCCAAGCGCCAGTCTGATCCCAGCATCCGCTCAGTGGCCTGCGAGCCAGAGGAGAGACTGTCTGCTGTCCGTAAGCCTGAGGCAAATTCTGTGCCTTCCCTCGTGTCTGCCCTCAGTGTGCCCACCATGCAGCCTGCTAAGAGCCACGGGGCTGGTGCCTTGAACACTCGATCAGCCAGCAGCCCAGTACCCGGCTCCCTCCAGTTCACCCACAGCTCCCTGGAGCACATGTCTAGTGTACAGTACCCACACCCACCCATCCTAGTCACCAACAGCCATGGTGCTTCTGTCACTTACAGTGAACAGTTTCCTAAGTATGATTCTGTGAGCACAGACCACGGATACTACTCTATGCTTAGTGATTTTTCTAACATGAGCATGAGCAGCATGCACAACGTGGACAGCTTCTGTAGCATGGAGCATGAGCATGGGATTTATCAGCGAAATCCCAGCCAGCATTGCCCTGAGCCCTGCCTCAGCCACTCTAACAGTGACTCCTTCTCCTCTTATGGGGAATTATACATGAGCTCAGTGGACAGTAGCCTGGATGAGAGCATAAAGGGGCAGCAGTCTCCTGCACAGAGCAGACTCCAGGCCTTCTCCCATGGGGGGTTCCACCACGAGGCCCTGACCCGAGTGCAGAGCTATGGCCCTGAGCAGCCTAAGCAGGGTCCAAGCAGGAAGCAGTCCATATCCCACCTGGCACCGCATGTCCAGCACCCTGCTGTTGGGGCCAGGTCCAGCTGCCCAGGGGACTACCCCTTACCTCAGAATGTCCTCCCGTCACAGTCCTCACAACCGGGACGCTCCCTGGGCATGACACGCATGGACAGCATCTCAGACTCCAGGCTGTACGAGAGTAACCCCATGAGGCAGCGGAGACCCCCACTGTGCCGCGAGCAGCATGCCAGCTGGGACCCGCTGCCCTGCGGCAGTGAATCCTATGGATACCACTCGTACCCCCTGAGTAACAGCCTGATGCAGCCGTGTTGTGAGCGGGTGATGGTCCGCAGTATGCCTGACAAGATGGAGCAGATCTGGAGGTCTCCGTGGGAGAACCCGCCTCAAGCCGAGCGCCATGTCATCCCAGAGCACCAGTACCAAACATACCGCAACCTCTGCAACATCTTCCCCGCTTTCGTGGTGCACTCTGTCATGGAGAAAAACCCTCATCTAACGGACCCACAACAACTCGCTGCTGTCATTGTCACGAAGCTGAGGTCTTGCCATTaagtgtgtttattttatttttgaagcTACAATTGTCTGAATAGTATTAGTATTCTATATTTGAAGTTATTTGATTGTCATCAAAACAATTTCTCCTCATGAAATTCAGAAACCCAAAATCATTATAATCAAATGTAAGGGAAACTTTGACTGATGGTAAGATTATGTATTTGAATTGAAACGTAGTCCTCTATCATTTGATACAGTGAGGAATTAGTTCACTATACCTAGATAATATTGTGCATATCTGACACTGATGTAAATACTATGTGACTTTGTTGTTTATTGTGCAATGATTTGTGGTAAAAGACAGAGGGAAGTGAGTGCAACCATACCTCAGAGCATGAACTTTGACATTTTAATGGCCTTATATCTGAATGACCTCACTTCTCCAGTCATTGTTTAATGGATTTCAATGAATATCCTTATGTTGTTGAGGTCAGTCTCTTTTGCTTTTTAAATGTTAAGCACTGTAAGTATTTagaatgatatatatattttctcaatCTCACTTTACAAAGCTACTATTTTGGTAGAACTTGTGAGTGCACGTATATAAGCAAGCCAAACTAGAACTGGGAAAGATCAGACTTAAAACACCTGTGCTAGTATGACACATGAAAGCCATTTCAAAGCTGCTGAAATAATGCCAAAAAGATAGATAATTGACCTTGTCATTATAAAGCAATTATAGTTTTGATGCAGACAATTGATTGGATAGTAGTGTAACATCACACCAGTGTTGTAAGCCTTTTCTATGGTATATTGTATGGCTTGCTGTGTTGATTAGTTACATTAATGTAACTGTGTTACATGAACATTATTGGAATCATTTTGAGCATGTGTATATATCATTGGGACCTGGCATGTGACTTAATGGCACAGAATGGCACTTCCATTGTGTCTAACATGACTTATTTGTAATTACTAAGGAACTGGTGAAGTCTCTTTGGCAAAATGCTTTAAAGAAAAGCATCAATTTCCTTATTAATGCTGAGAGACAACCCATATAAATGAACACAtgtaaagaaaacaaaaaaaaaacatttctgaatGTTATTTGCCCAAAATAATTTTGGGGCTTTGTTGACTTTTGTTTTTTCATGAACTAAGAGCAGGCCATGTTGGGCCTGTTGTCTCTTCATGAGAAGGTGTGACACACTGCCTAAATGTTTCTTACTGTGAAACACTCAGAATGCGAGGCTGCCGTCAGGGTTGTTTCTGGCATTTGGCTTACAGTTTGCGTGCCTACCTTTTCCCCTCACTACTTTCCATCACGTTTGAAAGGTTTCATTATGATGTGAAATATGTTGGTTATAATATCATTTCTAAAGACTTATGGAATTTCTTTTCTCAGTGAGTAAAATATGATCTGAAATCAAGGTCTTGGGCCATATCTAATGCACGTTCATATTTAGTTTATTTTGGCATGACGTGCatgtttcatatttttgatgagagtagaagagagccccccccccccccc

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K18668 ZC3H12, MCPIP; ribonuclease ZC3H12

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1201930 lncRNA downstream 67139 26895767 ~ 26896834 (-) True LOC110537289
TU1201923 lncRNA downstream 80531 26881722 ~ 26883442 (-) True G1054957
TU1201917 lncRNA downstream 92298 26870664 ~ 26871675 (-) True G1054951
TU1201886 lncRNA downstream 171345 26792141 ~ 26792628 (-) True G1054920
TU1201878 lncRNA downstream 177507 26779830 ~ 26786466 (-) True G1054914
TU1201988 lncRNA upstream 20056 26991606 ~ 26998383 (-) True G1055017
TU1202010 lncRNA upstream 49850 27021400 ~ 27023457 (-) True G1055037
TU1202011 lncRNA upstream 52439 27023989 ~ 27024209 (-) True G1055038
TU1202012 lncRNA upstream 52687 27024237 ~ 27024438 (-) True G1055039
TU1202073 lncRNA upstream 55051 27026601 ~ 27028045 (-) True gab3
XM_021623219.2 mRNA downstream 8916 26931763 ~ 26955057 (-) True LOC110537292
XM_021623220.2 mRNA downstream 20665 26931763 ~ 26943308 (-) False LOC110537292
XR_005034931.1 mRNA downstream 67060 26895765 ~ 26896913 (-) False LOC110537289
XR_002475596.2 mRNA downstream 75668 26886033 ~ 26888305 (-) True LOC110537288
XM_021622396.2 mRNA downstream 100720 26809353 ~ 26863253 (-) False ar-alpha
XM_021623226.2 mRNA upstream 941 26972491 ~ 26973687 (-) True shisa2a
XM_021623236.2 mRNA upstream 55014 27026564 ~ 27053813 (-) False gab3
XM_021623235.2 mRNA upstream 55014 27026564 ~ 27054832 (-) False gab3
XM_036937296.1 mRNA upstream 456029 27427579 ~ 27434335 (-) True LOC118937652
LOC110537303 mRNA upstream 462912 27434462 ~ 27440175 (-) True LOC110537303
TU1201136 other downstream 1304968 25657269 ~ 25659005 (-) True G1054232
TU1201112 other downstream 1339336 25623879 ~ 25624637 (-) True G1054211
TU1198799 other downstream 2356153 24604280 ~ 24607820 (-) True LOC118936414
TU1198735 other downstream 2408973 24554697 ~ 24555000 (-) True G1052040
TU1197008 other downstream 3719703 23243637 ~ 23244270 (-) True G1050429
TU1201977 other upstream 9233 26980783 ~ 26982355 (-) True G1055010
TU1202178 other upstream 173660 27145210 ~ 27145493 (-) True G1055199
TU1203334 other upstream 1006476 27978026 ~ 27978436 (-) True G1056225
TU1204716 other upstream 1204836 28176386 ~ 28177073 (-) True G1057449
TU1204892 other upstream 1469719 28441269 ~ 28441695 (-) True G1057600

Expression Profile