RNA id: TU1205421



Basic Information


Item Value
RNA id TU1205421
length 2419
RNA type TUCP
GC content 0.46
exon number 8
gene id LOC110537376
representative False

Chromosome Information


Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 29393595 ~ 29436595 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TTCCTCAGTATAGTGTGCTGTATGTAAGCACACTATACTGTGTGCTTGCACAGACTTGACAGAGATAATAACCATTGCACTTTGTGAAACTGACCTATGATATTTGGTTGATACACCCCAGTGTGGGCAGACTACTATATGACATACTGATGTAGTCCATATAACTCATTAATGTATTTTCCTTCTCTTCATCAGAGGTTCACCCTTGGTGTCCGGTTGTATTAGAGTCATGGTGTCCATGCTGAAATCGGAAGAGAAGAGGCTGTCAGGGCAGAATTTCAGATGAGCTATCAATTGTCCAGTCAGGGTGCTCCTCCAAGAATAGTGGCTACAACAATGGTGGTAGTGTCCCCGTGAAGACGGACCTGTTTTTCCCGTGGATCCTGGATGTGTTCCAGCTGACAGCGTTTGACTTCTACAAGGTGATTGAGAGCTTCATCAAGGCTGAGCCCAGCCGGAGTAAAGACATCGTCAAGTACTTGGAGCTCTGCGAACAACTCATCATGGAGACTTTCCTGGAGAAGGGGCCAGTAAGAAactgctaacagctgagaactgctagccaGCACAACAAGTCAACAACTTCGGGAGGCTGAATCCCCTTTCAGCGGGAACACTGGACAAAGGGAGGACCACAGCAAGGGCCGCAAGCTGAGCGTGTGCTGGAAACACGTTGCCAATGCCACTGACAGACTTCCGGCACATACACCCTCCCTGGACTCCACTGTTTGAGCTGCTGAGACAAACTCGTGAGGAGGGTCCAGTGGAGCAGGCTGAGCCACCTGCCACCCTCAACCAGTGATGTGATTTAAACCAGACTTATGGTTCCATTCATCTTCCCCGCTGTCATTTGGTATCTTTCCCCTGTGCGCCCCAGAAACCGACCCCAGCCGGCACCTGAATCTCCaggccctccctcctctcagcccCCTGCCACGGCAAACCATCAGACCCCTTGGCACCCCAAGTCAAACTCTCTCAGCCTCTTCTACAGAAAATTGTACCATCTGGCCTACATGAGGCTGAAGATGCTCTACACATACCTGCTGACCTCTCACCCTGAGCTGGAGCCAATCATGTGGACTTTGCTTCAGCACACACTACAACATGAGTATGAACTGATGAGAGACCGCCACCTGGACCAGgtattgtgcacacacacacatactcgaATGCAATTCAGACATGCAATCAAAACACACATTAGTGTTGTCATGATACCGAAATTGTATTAATGATACCAGGCCAAGTGTCACGATGCTATGTAGTATCGCAATACCACAGGGAGAACActtgttcttgttttttaaagTTATGTGCATGTGCTACACAACACCTGTCACTGATATTCACACTTGTACTCAATACAACACATATTGAATTTAACTTCACACTGTTCACTGTGTAATAGAATTGATTGATATTCTtctgttttgggtcgttgtcctgttgcatcacccaacttctgttgagcttcaattggtggacaaaTAGTCGTACATTCTCCTGCAAACtgtcttgataaacttgtaaattcagttttccgtcgatgatagcaagctgtcctgGCCCTGAggtagcaaagcagccccaaaccatgatgctcccttcaCCACACTTTACAGTTGGGGTGAGGTTTTGATGTGGCTGTGCTGTGCCTATTTTCACCACACAGTGCTCCACTTTtgtttcatctgtccacaataTTTTGTGCTACTTCTTGCTCTCTTCTCATCACAGGAAACCTGATGGAGATTTCAGAGTGAGTAAGCATTTTATTTTCATCCTCAAGTGCTGGAGTCTCTTAACTAATGAAACTCAATGTCTCTGTTTGTTTCCAGGCTCCACTTGGACCCGCATGCAGGAACAAAATATGAAGGAGGATGCAGAGTCCGAGAAGGACAAGCCTTGAACTTAACTGAAGGACTTACTGTCCAGCATTGTTTGAGAGTATAGATGCCAGATACTACTTTCTAccccatacacccccccccccccccccccccatcctctcttTAACAAAAATGAATACTTTGAGAGTAATTTTGTGAATTCAAAAAAGTTATTTGTTTAGTGTGGATGCTTTAGATGAGTCCTTTTAATATATTTTTATCCTTGTTATTGAAATAAATTGTTATGGGAAATCCTGTGAGTTTCACCATGTTTTATAGAGACACTAGTTTTAAGGGTCTGGTTCAAGAAGAAGCACTGGACTATTCTGGAGTCCAGATCTGAACTACATCCAATACCTCTGGCAAGAGctgaaaacagcagttggtgGAGTCACCCCTCAACCGTTGAAGAATTATAGCAGTTTTCTGCTGAAGAAGGGGCCTCATTGCCAGTTGAAAGGAGCAGCAAGCTCATTGATGACTACAATAAGCATTTGTCGGGAGTTATCTTGGCCAAAGGCTGTGCA

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU1205352 lncRNA downstream 48335 29239597 ~ 29345260 (-) True G1057983
TU1205364 lncRNA downstream 72829 29263034 ~ 29320766 (-) True G1057995
TU1205206 lncRNA downstream 280643 29105790 ~ 29112952 (-) True LOC110537366
TU1205262 lncRNA downstream 289713 29103651 ~ 29103882 (-) True G1057906
TU1205202 lncRNA downstream 299462 29089801 ~ 29094133 (-) False LOC110537366
TU1205506 lncRNA upstream 14042 29436357 ~ 29436595 (-) True LOC110537376
TU1205510 lncRNA upstream 18407 29440722 ~ 29440969 (-) True LOC110536838
TU1205522 lncRNA upstream 37283 29459598 ~ 29462775 (-) True G1058112
TU1205524 lncRNA upstream 41036 29463351 ~ 29463602 (-) True G1058114
TU1205538 lncRNA upstream 63945 29486260 ~ 29486527 (-) True G1058123
XM_021623375.2 mRNA downstream 67214 29244223 ~ 29326381 (-) True LOC110537374
XM_021623370.2 mRNA downstream 165935 29211003 ~ 29227660 (-) False LOC110537373
XM_021623371.2 mRNA downstream 165935 29211003 ~ 29227660 (-) False LOC110537373
XM_021623373.2 mRNA downstream 165935 29211003 ~ 29227660 (-) True LOC110537373
XM_036937353.1 mRNA downstream 167305 29211003 ~ 29226290 (-) False LOC110537373
LOC110536838 mRNA upstream 17305 29439620 ~ 29440830 (-) False LOC110536838
XM_036937355.1 mRNA upstream 43564 29465879 ~ 29473201 (-) True LOC110536839
XM_036939500.1 mRNA upstream 185322 29607637 ~ 29608459 (-) True LOC110536842
XM_021623396.2 mRNA upstream 256996 29679311 ~ 29682360 (-) True LOC110537384
XR_002475616.2 mRNA upstream 323198 29745513 ~ 29756995 (-) False LOC110537390
TU1205368 other downstream 125604 29267444 ~ 29267991 (-) True G1057998
TU1205134 other downstream 486576 28895616 ~ 28907019 (-) False LOC110537362
TU1205141 other downstream 493271 28895582 ~ 28900324 (-) False LOC110537362
TU1205115 other downstream 493271 28895616 ~ 28900324 (-) False LOC110537362
TU1205121 other downstream 493271 28895616 ~ 28900324 (-) False LOC110537362
TU1205763 other upstream 378538 29800853 ~ 29803616 (-) False G1058320
TU1205764 other upstream 378538 29800853 ~ 29803570 (-) False G1058320
TU1205835 other upstream 529240 29951555 ~ 29953654 (-) False LOC110537405
TU1206714 other upstream 912512 30334827 ~ 30335256 (-) True G1059183
TU1206775 other upstream 1025077 30447392 ~ 30452213 (-) True LOC110537417

Expression Profile


TU1205421 Expression in all Baseline Samples

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TU1205421 Expression in each Bioproject

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TU1205421 Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 100.
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