RNA id: XM_021623418.2



Basic Information


Item Value
RNA id XM_021623418.2
length 2301
RNA type mRNA
GC content 0.46
exon number 3
gene id LOC110537397
representative True

Chromosome Information


Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 29966318 ~ 29968956 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CCTAACAGCAAACAGGAAGAAGAAACTTCCGTTATTATTCAAGGAAAGATGCTAACTGGAAAGCATGCAACAATTCTTTAAATGCCACTTGAAATTATAGTTTTGAATTATTTTGTGACTAAGTGTTAGCTACAGACTCAATTATGTACTTGCTAGGTAAGTGAACTAAACAAGCAGAGGGACAGCGTTCAGTCAGAGGCAAGGGGTGGGAGTTAGCAGCTTTCACCAAACAAACGTGGGCACACTTCCAGATGCACTCAGCCAGTTGTTTAACATACAGGACAAGCTAAAATACGTAGCTACTAGCTATCTTGTTTGAAAACATCTCTGGACTTTAGTATTATTAATAACTCATGACTTGAGGTCAGAATTTGTTCGAGGGTAACACGAAAATGTCGGCAAACGTgagtcctccaaacacggcgttGGTAGCAGAATTATCATTTTCGTTTCAGGATGAATTGACTGCTACTATACAAAATGCATTAGGAGTAGCAGTGGAGGTAGCGGTGGTTGAGGTTACAAAACTAGTCGGCCAAGTGTTGAGGGACGTGCGGGATCAAATGCACGAGACGCTGCGGGACAATAAGTCACTAAAGTTTCGCTTGCAAGCAGCCGAAATTGAATTATGTGCAGCGCGAGGAGAGGAACGTCAAGTAGAATCAATAATAGGGGACAAAGCCAGTACCAATAGTAGAATTCAACAGGTTCATCAGCAGCTGAATTCTCTAAACGTCTCACAAAATACAATCAAAtcgggaagagaaggagagcatGGGGTTCATGAATCCAATCAGTCTCTTCATACAAAAAATGTTGAGGATAGGTATGGAGGATTTGAATCAGAAGTTGCTGATATCCCTGCATATCTTAACGAATCGTTTTGTGAGATCCGTGAGGATGGTCGTATCTGCACTCAAGATATTAAACCAGATTTATTGGGCAAGTCGACCTTAAGTCAAAGAGATGCAGCTGGGACTAAAGCGGTTCTCCCAAACATGTACTCAGACACCCATGAAGATGCTGAACATTTTAACCGAGCATGCACAGAGACAACCGCAGGACATGACACATCCACACTTGACAGCCATCCCTTCCCTGAAGTTACCACAAAGAATGCAGAGGTGAAGTGTCTGGTTGAAGTGAAGGTGGAGTCTGCAGACCTGGGATGCAGTAGGAACTCTGGTCCCCACAccgaaggaggagaagaggactaCTGTCCAGACAGTCTCTCCTTGGCTCAAACTAGGCTGCTGGAGGATTGGAGGCCGGAGGCACTGCAGCTCCCTCACAGGGATCCAGACTCATTCACCCCCTCCACTAGCCACTCTCTATCGGACTCCCCAATCTTCAACCCAGACATTCCAGACTTGGACATCCTATCGTCTTCTTCAGCCACAGGTCTCCATGCAGGCTTTGGTAAGCAGCAGTACCCACCCAGAGAGACTTCTGGGGCCTCCACCTCTCACTCACACCAGATGTACAGCCCTCAGATAGATGAAGTGAACAACATGGCTGCGGCACAGCACATCTGCAAGATCTGTGGAGAAAAGTTCCATCTGTCAGAGGAGCTGCGGCGACATCGTAGTCTTGTTCACCCGAAGGACATGAACAAGCTCCCCAAGCGCAACCTCTACCCCCCTGGGCGGAGCCCGTACCACTGTTCCCTGTGTGGTCGAGACTTCAACCGCATGGAGCACCTGAAGATCCATCAGCGTATTCATACTGGAGAGAGGCCATATGCCTGCACCGTGTGCAATGCACGCTTCCGTCACTCTTGGGCTCTCACAAGACACTTCcgcattcacacaggagagaagccctacACCTGCAGCCAGTGTGGGAAAACTTTCCGAAACTGTGGGGGGCTGCGATTTCACCAACGCACTCACTCAATGGGAGGGGTCGGATGATAAGGTCTTCATGAAAGACTAATGGAAGGAAAAACAGGAAGCAAGGAAAGCACTGGGGATATACAGAGAGactggtaaaaaaaaatggtattaGCTTACTGTACATGTTAAAATAAATTTAGTCTGTCTTTTAACGGAAGGAACAGAAATAATTCAAATTGGGGGCAAAGGGAGCAGAACTTTGAGTGCAGCACAGTTGATGTGGTTCATACAAGGTGAGGTGCATCATTGATGATGTATAGACAAATGTCCGGCTTGAAATATCCTGTTAAATATGACAATCTGTTCCCATACACATTTACTCAGCTAGTGTTTTGTACGATGGCTTGCTTATTTTACTGTTGCCAACTGACATGTTTCTGTATTAAAACCCCACAAAACAAATACA

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU1205866 lncRNA downstream 1969 29963926 ~ 29964349 (-) True G1058395
TU1205836 lncRNA downstream 6320 29957507 ~ 29959998 (-) True LOC110537405
TU1205850 lncRNA downstream 36645 29928616 ~ 29929673 (-) True G1058384
TU1205798 lncRNA downstream 94627 29871488 ~ 29871691 (-) True G1058353
TU1205797 lncRNA downstream 95320 29870758 ~ 29870998 (-) True G1058352
TU1205923 lncRNA upstream 79152 30048108 ~ 30048488 (-) True G1058446
TU1205928 lncRNA upstream 81778 30050734 ~ 30051037 (-) True G1058451
TU1206000 lncRNA upstream 143551 30112507 ~ 30112725 (-) True G1058522
TU1206044 lncRNA upstream 176622 30145578 ~ 30148262 (-) True G1058564
TU1206053 lncRNA upstream 185969 30154925 ~ 30155147 (-) True G1058573
XR_002475620.2 mRNA downstream 5898 29951698 ~ 29960420 (-) False LOC110537405
XM_021623421.2 mRNA downstream 114174 29842845 ~ 29852144 (-) True LOC110537401
XR_002475616.2 mRNA downstream 209323 29745513 ~ 29756995 (-) False LOC110537390
XM_021623396.2 mRNA downstream 283958 29679311 ~ 29682360 (-) True LOC110537384
XM_036939500.1 mRNA downstream 357859 29607637 ~ 29608459 (-) True LOC110536842
XM_021623423.2 mRNA upstream 268391 30237347 ~ 30257703 (-) False LOC110537402
XM_021623416.2 mRNA upstream 301360 30270316 ~ 30304242 (-) False LOC110537396
XM_021623417.2 mRNA upstream 301360 30270316 ~ 30304242 (-) False LOC110537396
XM_036937375.1 mRNA upstream 301360 30270316 ~ 30304242 (-) True LOC110537396
XM_021623426.2 mRNA upstream 338919 30307875 ~ 30322529 (-) False LOC110537406
TU1205835 other downstream 12664 29951555 ~ 29953654 (-) False LOC110537405
TU1205763 other downstream 162702 29800853 ~ 29803616 (-) False G1058320
TU1205764 other downstream 162748 29800853 ~ 29803570 (-) False G1058320
TU1205421 other downstream 544003 29393595 ~ 29422315 (-) False LOC110537376
TU1205368 other downstream 698327 29267444 ~ 29267991 (-) True G1057998
TU1206714 other upstream 365871 30334827 ~ 30335256 (-) True G1059183
TU1206775 other upstream 478436 30447392 ~ 30452213 (-) True LOC110537417
TU1206840 other upstream 666102 30635058 ~ 30636722 (-) True LOC110537425
TU1206894 other upstream 769120 30738076 ~ 30773807 (-) True LOC110537432
TU1207180 other upstream 1098629 31067585 ~ 31070860 (-) True G1059610

Expression Profile


XM_021623418.2 Expression in all Baseline Samples

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The chart has 1 Y axis displaying values. Range: 0 to 60.
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XM_021623418.2 Expression in each Bioproject

Bar chart with 21 bars.
XM_021623418.2 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 100.
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