RNA id: XM_021623434.2



Basic Information


Item Value
RNA id XM_021623434.2
length 1284
RNA type mRNA
GC content 0.47
exon number 8
gene id si:ch1073-143l10.2
representative False

Chromosome Information


Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 30418042 ~ 30422902 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GTAATTTTATGTgtctatttttgtattttgtatgatTTCGTTGTCGTTTTTCCCCTTCCTACATTGGATATTTTTCTATAGTGTACCACCcctacagtaggtggcggcatgcacctcTAGGATTGTTTGCGGACCGCCATAATACTGCGGGAAGAAGACATCCTGTTGCAGCTGAGCCCAGACAGCCATGACTAGCAGTGCTTTTGCTTTGATCTGTATACTGTGCAGTCTTTTTCTCCGCATCCTCAGTCCTGTTGAAGTTTGTGAGCACAGCCCTGCAACTAATTATTCATCAGCGCAGCTAAGAGAAAAGACAGCAATGGAAGGGTGGAAGAGTCACGTGCGCGCTAGACTGTTCCAGAGAGATTGTACACAAAAGGACCCCTTCAGTGGTATCTTTAACACCTTGTCCGAGCTAGCGGAACAGCTTGATTTACGGGATACACTTTGGGATGAGGTACAGAGACCCAGTTCTGAAGGAGATGTTGGGCTGACGGTTGACCACAGAGAACTATACCTCCAGCTCAGAGAGAGTGAACATATAACAGAAAAGCTCTCTCAGACAGTCTCTGACCTGACCACTGTCATGTACCTGAAAGATGCTGAGCTCCAATACTGCCACTCACAAGTCTCCCGCTATCGGAAGGAAGCTGTCACTCAAGCCAGGGAGGCCAACCTTCTGCAGGCCAGCCTATCAGAGTTTGAGTTTGCATTGGCGAGCCAATCAAAGGAGTTGGCAGCCCTGCGGTTGGAGCAGCGGGAGCTGAAGGAGGGGCTTGCAGCggcctggagagagaaagaagagcttCTGGAGCGATGGATGGATGAGAAGAAGGAGGAGGCGGAGAGGGTGAACAGGCACAATGACACACAGGAAAGGTGGCATCGTTTCACCCGGCGACTCAACAAGCATCACCGTAGAGAGATGCTGCGACCAGGTGAGCAGACCAACTCCTGGACGACTGGTAGGCCTACAACTGAACCAGCAACCACCATACAGAAGGAGGGTGGTGCACACTGCCCAGGATGGACCTTGACCTTTAATCCCAAAAGCCTCCTGTACTGAAACACTCCTTCCTGTAAGACACACTGAAAAAACTAGACCTTGAATGTGACTTTTTTGTGTGTATACATTGAAGGATATTTGAATGTGGGCTTTTAATCAATACTGTTGTGAATTTCAGATACGGTATGTATAGGCTTGTAAATTAGTACCCAAGACCTAACTCAATGTTTTCAAATACCATGAGAATAAAGTAACTGTTCAGTCATTTTTCACTAAAA

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU1206754 lncRNA downstream 15818 30401998 ~ 30402224 (-) True G1059220
TU1206749 lncRNA downstream 27136 30390620 ~ 30390906 (-) True G1059215
TU1206736 lncRNA downstream 48310 30369533 ~ 30369732 (-) True G1059202
TU1206727 lncRNA downstream 57965 30359830 ~ 30360077 (-) True G1059194
TU1206723 lncRNA downstream 61802 30355946 ~ 30356240 (-) True G1059190
TU1206760 lncRNA upstream 2162 30424681 ~ 30425255 (-) True G1059226
TU1206766 lncRNA upstream 9577 30432096 ~ 30432310 (-) True G1059232
TU1206773 lncRNA upstream 19018 30441537 ~ 30442343 (-) True G1059239
TU1206774 lncRNA upstream 20209 30442728 ~ 30442956 (-) True G1059240
TU1206793 lncRNA upstream 81669 30504188 ~ 30504825 (-) True G1059258
XM_021623433.2 mRNA downstream 37423 30370167 ~ 30380619 (-) True LOC110537411
XM_021623430.2 mRNA downstream 48718 30347351 ~ 30369324 (-) False LOC110537410
XM_021623431.2 mRNA downstream 48718 30347351 ~ 30369324 (-) True LOC110537410
XM_021623432.2 mRNA downstream 56371 30347351 ~ 30361671 (-) False LOC110537410
XM_021623428.2 mRNA downstream 94898 30307875 ~ 30323144 (-) True LOC110537406
XM_021623441.2 mRNA upstream 24867 30447386 ~ 30452456 (-) False LOC110537417
XM_021623439.2 mRNA upstream 34016 30456535 ~ 30460284 (-) True LOC110537415
XM_021623443.2 mRNA upstream 39630 30462149 ~ 30465256 (-) True LOC110537418
XM_021623444.2 mRNA upstream 44634 30467153 ~ 30474137 (-) False LOC110537419
XM_021623445.2 mRNA upstream 44634 30467153 ~ 30474411 (-) True LOC110537419
TU1206714 other downstream 82786 30334827 ~ 30335256 (-) True G1059183
TU1205835 other downstream 464388 29951555 ~ 29953654 (-) False LOC110537405
TU1205763 other downstream 614426 29800853 ~ 29803616 (-) False G1058320
TU1205764 other downstream 614472 29800853 ~ 29803570 (-) False G1058320
TU1205421 other downstream 995727 29393595 ~ 29422315 (-) False LOC110537376
TU1206775 other upstream 24873 30447392 ~ 30452213 (-) True LOC110537417
TU1206840 other upstream 212539 30635058 ~ 30636722 (-) True LOC110537425
TU1206894 other upstream 315557 30738076 ~ 30773807 (-) True LOC110537432
TU1207180 other upstream 645066 31067585 ~ 31070860 (-) True G1059610
TU1209063 other upstream 1568691 31991210 ~ 31992555 (-) False G1061331

Expression Profile


XM_021623434.2 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 8.
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XM_021623434.2 Expression in each Bioproject

Bar chart with 3 bars.
XM_021623434.2 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 8.
End of interactive chart.