RNA id: XM_021623439.2


Basic Information

Item Value
RNA id XM_021623439.2
length 2831
RNA type mRNA
GC content 0.45
exon number 9
gene id LOC110537415
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 30456535 ~ 30460284 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTATATCTAACCAGGGAGAGGCGCTGTTATGACAGATTACGAAGTGCCTCTATTTGGTGGAGGACTATGTTGTGAAATCTTTCAATTAGTTCTATTTTGATAAATAGTAACATTTTTTTGATATTTTGTCGATTTCGTTGACGACGCAATGGACAACTTAACCGGAGGATGGAACTTTTCAACGACGCAAATGTTTTGTTGAGGACTGTTGTGTTTTATTCTCTGACTagttagctactagctagctagccaagttgGAGTGTTAAtggttagctactgtagctagctagctaaccctaAAAAGTCACGTCTCAGCTGGCCGCCTAACCTAATTTCCCTTAAAAGTTATTGTAAGGGATATATCTCTCTAGTTGACAGTATTGGTCAAGTATGTGTTTGTTTAGCCTTTGTGCGACAACAGGAATTGCATTTGAGTACTTTATAAGGTTAGCTAGTTACGAATAGTCGCTTGCTGTAACTTTGAGCCAAGTCTGACTTCATCTTACAAAAATGAGATAGAGGGAAGACACCAAGGACATTTCCCGCTGATTTAGCTGCTCTGAATTGGACCGAAAGGTTTGTGTGTGAGGCCTGCAGGTCGGGCTTTCACCCGGATAGAGTAGGGCCGTACGCCGCCTCTGAGCGCTCCTAGGCCAGCAGCTCGCGCTGCTAGGCTGGAGGCCGGTGATTTCAAGAAATGGAACGAATGGAAGTGGACCAGTGCGCAGGCGCAGCTGCCGGGAGCGGAGGCGGGGCTCTTCGTAGATCGAACAGCGCCCCCATGATCACGAGTGTCAGCGATGGTATGACAGTGTTCAGTCCAACTATTTCACCCCGGTATCGACGGAGCAGTGTCTCTGTCAACCCCAGCTGCCCTTctctgGCTGTCCCCCTGTCCCCTTTCTCATTGGGTGGTGAGAGACCAGACCACAAAAGGCAGGAAGAGAATATGGAGATGACACTCAGGGGGAGTCTTCAGAAACTGAGTGATTCCAACCTGGTCCCTCCTGTCAGTCACTGGCATGACCATTCATCAGTGGGATTCCATTTACCGGACAGTGGTACCACCCCTAATTCGTCCCCTAGTCCAACTCGAAGGTTTAGGGGGCCAACAGTCAGCTCTACTGTGAGATGGCCTGCCCTGACTCCACTGAAAAGGAAAGGAGGAGTGGAGTCTGATGGTCCGCCGAAGAAGCTGTTTGTTGCCGGGGTAACAGATCCTGCTCACCGAACTAGTTACACAGTCAGTGTGACTCAGGCATCTGCTGGTTCTCCTAcaggtggtgtgtctgtgtgtggtgctaGTCCCCAGGGTAGTACCCtgtacctgtctcctcccccctcatTCACCTCTCACCAGCCCAATATCTAGAAACCACAACACCAGCAGCCTATCACAGACCAGGACTACAGTCAGTCCTAGATTCTACTCACAGCCTATCAGAGCGCTCCTCTCCCTCAAACCATCAGAGCCTTGGGGAAACTCATCATATTCCTTGCCTCCTGAAGTAATCATGTCTTGAGTTGTAATCAAGATAATATATAGATGTTACACAAAGACTGGCACCTGTGCTTTGTTAATCAGAAGGTTGCATGAAATGCCCTGCCAAAGGAAGTCaggagtgaagagactatacttTTCCTTGTTGGGCTTTTGTTTATATCAAAGTTAGAGGTGTTAAAAGGCCTTTTGTGTTGTGTTCAGGGGTAATGGTGAGGGCATGTTGTAATCCCACTGAACGTGACCCAATAGTCCAGTATTCTTTGATAGTCCAGAAGTAAGCGCTCAAAAATGAGACATGAAGATGAGGTGTCACAGCAGACTGTCAAGCCAGCGGTGGCTCAGTTTGTCTATGTGAATAGTGTATTAATATGTGAATACTGATATAAGTAGGGCTGCCTTTAAGGCAGGACTGGGAGTGGGTTCTTTGCCTAGGGATATAGAATCCCTAGGCAAAGCTCTGCCCAGAGGACCCACCAAGTCCTGGTCCTTTATGGCCTAAACCTAATGAGAGATTGGCGTGGATACTCACCTCTtgacaggtgtgtgtaaactttagTTTGATAGAAAGGACCTCGACTGGTGATCTCAGTCCTCTGGGTAGTGCGTGATATTACCCTTTCTCTACATGCATACTACTTTAAAAAGGGTAGCCCTTGGAGTGTTATCACATTTTCCCATTGATTACATGAATGTTATTATTTGACTTCTGTAATTTGGTATGGTTGTACATGCTCAGGACCCTCATCGATATTGTGAAATATCATAAGTGACATCATGGGTATATCATGTTGTTTGGGTTGATGTAATCTATGGGAAAGTTCTGTTTTTTAATCCCATGCATGAGTCTGTGACCTCCAGACCTTTTGACTTGTGAAATAGAGTACAAGTTGCTTAGAGAAGTGtcttttacaacaacaaaaaatatattgttATTGATAGTAACTATGTGTAATACTCTTCAAATGCCCTTTCCAGAGCTGAGTTTTACAGCAACAGACAGATTCTTTTATCTATATTTTGTCTCCCTTTTTGTGGACGGAACATTCTACTTCCAATTAAGATTTTGCACAGTATTAGTTTCACATTATTAATCAATATTGCTGTTACACAAATGGGATCCTGATTAAGACATGCTGTTGCGTTGTATTTGTTGCTTAATTTGTTAATTTCTCATcaggtctctgtcctgtctcaaaGAAGTGCTTAGGTCAGCAAGGGTTGAGGGTCATCTTCTGATCTTAACCCCAGATTTAGAAACTTTGTTTGTTTTTCCTCAGTGACAATCAGTGAATTTGGAGGGAAATAAAAACTCCAGTTGTTTTAAGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1206774 lncRNA downstream 13579 30442728 ~ 30442956 (-) True G1059240
TU1206773 lncRNA downstream 14192 30441537 ~ 30442343 (-) True G1059239
TU1206766 lncRNA downstream 24225 30432096 ~ 30432310 (-) True G1059232
TU1206760 lncRNA downstream 31280 30424681 ~ 30425255 (-) True G1059226
TU1206754 lncRNA downstream 54311 30401998 ~ 30402224 (-) True G1059220
TU1206793 lncRNA upstream 43904 30504188 ~ 30504825 (-) True G1059258
TU1206815 lncRNA upstream 125610 30585894 ~ 30586190 (-) True G1059280
TU1206816 lncRNA upstream 127459 30587743 ~ 30587974 (-) True G1059281
TU1206817 lncRNA upstream 128453 30588737 ~ 30589756 (-) True G1059282
TU1206818 lncRNA upstream 129863 30590147 ~ 30590386 (-) True G1059283
XM_021623441.2 mRNA downstream 4079 30447386 ~ 30452456 (-) False LOC110537417
XM_036937379.1 mRNA downstream 33633 30418042 ~ 30422902 (-) False si:ch1073-143l10.2
XM_036937380.1 mRNA downstream 33633 30418042 ~ 30422902 (-) False si:ch1073-143l10.2
XM_036937381.1 mRNA downstream 33633 30418042 ~ 30422902 (-) True si:ch1073-143l10.2
XM_036937377.1 mRNA downstream 33634 30418042 ~ 30422901 (-) False si:ch1073-143l10.2
XM_021623443.2 mRNA upstream 1865 30462149 ~ 30465256 (-) True LOC110537418
XM_021623444.2 mRNA upstream 6869 30467153 ~ 30474137 (-) False LOC110537419
XM_021623445.2 mRNA upstream 6869 30467153 ~ 30474411 (-) True LOC110537419
LOC110536844 mRNA upstream 16616 30476900 ~ 30479671 (-) True LOC110536844
XM_036937384.1 mRNA upstream 33837 30494121 ~ 30520834 (-) True LOC110537420
TU1206775 other downstream 4322 30447392 ~ 30452213 (-) True LOC110537417
TU1206714 other downstream 121279 30334827 ~ 30335256 (-) True G1059183
TU1205835 other downstream 502881 29951555 ~ 29953654 (-) False LOC110537405
TU1205763 other downstream 652919 29800853 ~ 29803616 (-) False G1058320
TU1205764 other downstream 652965 29800853 ~ 29803570 (-) False G1058320
TU1206840 other upstream 174774 30635058 ~ 30636722 (-) True LOC110537425
TU1206894 other upstream 277792 30738076 ~ 30773807 (-) True LOC110537432
TU1207180 other upstream 607301 31067585 ~ 31070860 (-) True G1059610
TU1209063 other upstream 1530926 31991210 ~ 31992555 (-) False G1061331
TU1209066 other upstream 1530926 31991210 ~ 31992441 (-) False G1061331

Expression Profile

XM_021623439.2 Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 5.
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XM_021623439.2 Expression in each Bioproject

Bar chart with 21 bars.
XM_021623439.2 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 150.
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