RNA id: XM_021623471.2


Basic Information

Item Value
RNA id XM_021623471.2
length 1397
RNA type mRNA
GC content 0.40
exon number 6
gene id LOC110537432
representative False

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 30738076 ~ 30773877 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGAGTGGTTTGTCCGTCAGGTTAGCGCTGTAATGAATTGAATAGGGGGGGTGGAATCCAATCCGGTTTGAGCTAGTTTTGTTCCAATGGAACATTAACGTCTCGCTACGCTGTAATAGAACGTACTGTTTGAATCTTATACCGAACAGTATTTTTCTTGCTCCGTTTTGGAACATTGCCCTCTTTTTTTCTTTTAACAAATACGCAAAACAGCCATGCCTAAAAGGAGCAAAGCAAACGCTGATGCTGAGGCAGCAGAGCCCAAGAGGAGATCTGAGAGATTGGTAAATAAACCAGCCCCTCCAAAGGCAGAGCCCAAGCCAAAGaaggaGAAGGCAGTACCCAAGCCCAAGAAGGCTAAGGAGGTGAAGAAGGCTGCACCTGAGGAGAAGGAGGCGCCTGCAGAGAATGGCGAAGCCAAAGCTGAGGAAGAGGAACCAGCCACAGAAGAACCTGAACAGAAAGAAGATGCGGCAGAATAACATCTCTCAAACCACATCTTTTATCACTGCTCCCTATTCCTCTTTCTTGTACAATTCAGGGGAATATTTTTATTGACTATTTTCTAAATGCAAGTTTTTTAGTAGTTTGATTGTAGAAACACATTTTTTTATGGAACAAATACATTTGGAGACGGATTTCATCACATCCCACATTTTTACATCTCCAGAACAATTACGGTTATtgtaaatgtcaaatgtttttatttttgctGTGGGGAAGGGGTGGGAATGGGCCAGGTTGCTGCATCAAGAACATGCAAGCATGTTGTTTACAGGATCCGGTCAAAACAGAGAGCTTGCCTGAGAGACTAACATTCCATAGGCTATATGAGGGACGGTATTTGTAACCTGTATTGTGTGGTGGGGATGAATTCCTCAAGGGGCAACACAGTTTTATTGTTTATAATGAGAAATGTTTTAGAATGTTGTAAGCTGTGTTCCGTATGTTAACTATTGTACTCATGCCATTTTTTTTCTTAACCATTCTGCTTAATAAACCTATTCCCTAGCACTGGAGTTCCTCCCTATCAGGCCTGTGCATTGCGTGTAATTGGTTTTGTCTCTGTTCTGTGATAGCATTGCAATAAATGTGTACAGCTGCTGTTTAAAAGGGTTTTCAAACTTTCTATATGCAGTGTTTAATGGTACATTGTAAATGGAATTCTTTGTTCTTAGCCAAGCTAATGACATAAGTGTGAAACATACTGTTGACTATGGTTCCTTTTGATGCTGAGAAACTGTACATCCACTTGAGCTGTCAAATACACAAACCAGCAATATTCATGTGGGTTTTAGGTATCAAGTACAAGTGTACAGTTCTTGTATTCTTTGTTTATAGATGTATCTGTGTCATGATTGGTATAAACAAACCAATAAAAATGTGGTTGTAATCGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1206900 lncRNA downstream 25358 30743829 ~ 30744806 (-) True G1059352
TU1206874 lncRNA downstream 62381 30707570 ~ 30707783 (-) True G1059331
TU1206825 lncRNA downstream 69658 30692953 ~ 30700506 (-) True G1059290
TU1206823 lncRNA downstream 69766 30691067 ~ 30700398 (-) True G1059288
TU1206822 lncRNA downstream 74830 30693176 ~ 30695334 (-) True G1059287
TU1206940 lncRNA upstream 43094 30816971 ~ 30821894 (-) False G1059388
TU1206941 lncRNA upstream 43094 30816971 ~ 30861437 (-) True G1059388
TU1207068 lncRNA upstream 226280 31000157 ~ 31006587 (-) True G1059505
TU1207110 lncRNA upstream 292591 31066468 ~ 31066694 (-) True G1059546
TU1207187 lncRNA upstream 299615 31073492 ~ 31073754 (-) True G1059613
XM_021623465.2 mRNA downstream 14724 30739765 ~ 30755440 (-) True mipepb
XM_021623459.2 mRNA downstream 98039 30648676 ~ 30672125 (-) False LOC110537426
XM_021623480.2 mRNA upstream 121185 30895062 ~ 31031782 (-) False LOC110537435
XM_021623477.2 mRNA upstream 121185 30895062 ~ 31031783 (-) False LOC110537435
XM_021623479.2 mRNA upstream 121185 30895062 ~ 31031783 (-) False LOC110537435
XM_021623476.2 mRNA upstream 121185 30895062 ~ 31031784 (-) False LOC110537435
XM_021623481.2 mRNA upstream 121185 30895062 ~ 31031788 (-) True LOC110537435
TU1206840 other downstream 133442 30635058 ~ 30636722 (-) True LOC110537425
TU1206775 other downstream 317951 30447392 ~ 30452213 (-) True LOC110537417
TU1206714 other downstream 434908 30334827 ~ 30335256 (-) True G1059183
TU1205835 other downstream 816510 29951555 ~ 29953654 (-) False LOC110537405
TU1205764 other downstream 966594 29800853 ~ 29803570 (-) False G1058320
TU1207180 other upstream 293708 31067585 ~ 31070860 (-) True G1059610
TU1209063 other upstream 1217333 31991210 ~ 31992555 (-) False G1061331
TU1209066 other upstream 1217333 31991210 ~ 31992441 (-) False G1061331
TU1209059 other upstream 1217507 31991384 ~ 31992555 (-) False G1061331
TU1209065 other upstream 1217507 31991384 ~ 31992441 (-) False G1061331

Expression Profile