RNA id: XM_021623475.2


Basic Information

Item Value
RNA id XM_021623475.2
length 1348
RNA type mRNA
GC content 0.42
exon number 3
gene id LOC110537434
representative False

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 30848508 ~ 30879117 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTCACGTAGTATAAAACCTCCCCTCTATAACGGATCCAAGGCATCGTGGACAGGACTTCTTACCAGTGACAACTGTACATCAACTGTATATCAAATACTGGAATCATCCTAGCTGCCACACTACAACACTTGGGAATCATGAGTGAGAGACAAGGATCTGGAGCCATGAGTGGAAACAGCAAACCTGCTGGACAAGATGACTCTAAGGCTGCTCCTGAGGAGGACTTTGCGGACATCGACATGAAGGCTCCGGAGACGGAGAAGGCTGCTGTGGCCATCCAATCACAGTTCCGGAAGTTCCAGAGCAAGAAGAAGCAGGAAGTAAAGTCCTAGAGTGGGCAGGACAGAGCCGGGCAGCTCTGTCTCCCATAGACCGGGACTGCACCAGTTGGGGGTTTGGTCTTGCATGTCAATCAAATCACACCGTTATGGACTCAACTGAGGGGGAGTTAAGGGGAAGAGGGAAGGCTAGAGGGAGGGGTCAGGGTTCAAGGATCAAGGGGTCACTGATATCTTTGAAATGATTATATGTAACTTATTAATTGATTGCTGTGTCCATAAATGATGGTTAAGTTCTGGATAAATCTTGATCTTTCCTATGATTTTGCTATTTTCGTTTTTTATTGATACTGTAATACTACTACACTCTATATTTTCCAGTTGCTGTAGCAGTCCAAAACCTTAGTAgtcctctcatgtctctctcatGTCGTGTACGCTGCAATATACCCATTTGAACAATAAAACGCTGCTTGATAAGTAGGTTTCCTCGTAAAGCAATTAAGAAACTGGAACCAGGGTTTCACCCTCAGGCGGAACATGTAGCCAAATGTATTGTGAAGATTGATCGTCAGATTCTGCATTCTTTTCAACTGTGGCATCATAAATCTAAAGATTTTTTTCCCTAGTATGTCCGTTATTAAGGGTGTTTCCCTCTCATTGTGGGGAGTGTTTCCAGACATTCCAGCTTGTCTTGTTTGATCCCTCCCAGTTATCGCAGCGCCCAGTGGCTGATGCATTTAGGATTCAATCAATGGCTACAGTTTGCTTTCCAATGTCTCCGGTGTCTCAACTTGCCAACTAAATCTAGGGCTTGTTCTGTTATTTACATGAGAATTGAGgatttccttccttcccttcaaCTTCAACGTCAATGGaaagtgtttttattttgtttgtatGATTTGTTTTGACATTAATTGTTTTTTAATGGTGTTTCTATTGAATCCCCATTGTTTCCTTTTGTTGTTCAAACCCAAATGAGTGGAATATACTGTACAATACCATCAATCTTCAGTAGAGACACGTTCAAAGAATACTTAATAAATATCCAAGAGGTAAACATTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1206407 lncRNA upstream 76590 30737656 ~ 30771920 (+) True G1058905
TU1206397 lncRNA upstream 136358 30711833 ~ 30712152 (+) True G1058900
TU1206380 lncRNA upstream 174168 30674054 ~ 30674342 (+) True G1058883
TU1206366 lncRNA upstream 187816 30658879 ~ 30660694 (+) True G1058869
TU1206352 lncRNA upstream 205365 30633186 ~ 30643145 (+) True G1058855
TU1207105 lncRNA downstream 185065 31064182 ~ 31064633 (+) True G1059541
TU1207107 lncRNA downstream 185589 31064706 ~ 31065014 (+) True G1059543
TU1207116 lncRNA downstream 192020 31071137 ~ 31071507 (+) True G1059549
TU1207119 lncRNA downstream 195332 31074449 ~ 31074779 (+) True G1059552
TU1207122 lncRNA downstream 196561 31075678 ~ 31107101 (+) True G1059555
XM_021623473.2 mRNA upstream 24152 30798899 ~ 30824358 (+) False igsf5a
XM_021623472.2 mRNA upstream 24152 30798908 ~ 30824358 (+) True igsf5a
XM_021623470.2 mRNA upstream 59873 30774040 ~ 30788637 (+) False LOC110537431
XM_021623468.2 mRNA upstream 59873 30774055 ~ 30788637 (+) True LOC110537431
XM_021622519.2 mRNA upstream 108798 30738229 ~ 30739712 (+) True LOC110536847
XM_036937395.1 mRNA downstream 367170 31246287 ~ 31303725 (+) False LOC110537442
XM_021623495.2 mRNA downstream 367189 31246306 ~ 31303725 (+) False LOC110537442
XM_036937394.1 mRNA downstream 386544 31265661 ~ 31303725 (+) True LOC110537442
XR_002475626.2 mRNA downstream 498750 31377867 ~ 31379355 (+) False LOC110537444
XM_021623497.2 mRNA downstream 534846 31413963 ~ 31472999 (+) False LOC110537445
TU1206279 other upstream 331620 30516081 ~ 30516890 (+) True G1058787
TU1206149 other upstream 590961 30257057 ~ 30257549 (+) True G1058669
TU1205938 other upstream 777104 30069627 ~ 30071406 (+) True LOC110537400
TU1205939 other upstream 779048 30068352 ~ 30069462 (+) False LOC110537400
TU1204517 other upstream 950035 29898196 ~ 29898475 (+) True G1057271
TU1206610 other downstream 121110 31000227 ~ 31007066 (+) True G1059091
TU1207289 other downstream 328512 31207629 ~ 31209357 (+) True G1059685
TU1208110 other downstream 931945 31811062 ~ 31811347 (+) True G1060470
TU1210205 other downstream 2480617 33359734 ~ 33366249 (+) False G1062404
TU1210206 other downstream 2480617 33359734 ~ 33362605 (+) False G1062404

Expression Profile