RNA id: XM_021623496.2


Basic Information

Item Value
RNA id XM_021623496.2
length 2462
RNA type mRNA
GC content 0.45
exon number 8
gene id LOC110537443
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 31304923 ~ 31333428 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATCCTTCCTGACTTAGAGGAAATGTACCTGCTCTGCACAACTGTTGCGGGGGAGTAGGTTGTTGATATGATGATTGGTCGAATAGGCTACAGCACAGTTGATATGATGATTGGTCGAATAGGCTACAGCACAGTTGTTTTTGATCCAAAATAAGAAGTATCCAGCGGTAATTCAGATTCAGCACAATGCTTCACAGGAAACCGTCAAACGTCTCAAACAAAGACCCAAAGAGCAAGACAAAACCGAAGCGCTCCACCAGCTTTGGCCGATTTGACACCTTTAGACACCAACCAGCCCAAGTGAAGCCAGTGGAAAATGGCGATCCTTCGTCTGCAGAGGGAGAGCAGGTTGACAGTGGTGACCAGACCAGATCAGGAGGTATAGGGAAGAAGATGAAGGCCATCTCACTGACGATGATGAAGAGGATGGGCAGGAATTATGCCAAAGCCCTGTCAGAGGAAATGGTtgacgggacagagagagatgaagaaggaGAAGGGGATATTGTTAATGGTGTCCATTCATTTCCAAAAGGACACAGAGTGTCCAGTCACTCCCTTGAAAGTCTCTACGGTCTCAACAGTGGACACAGCAATTCCAGTGGGTTGACCAGCGGGTCAGATGGCTTCAGTAACAGAGACAGTCTGAGGCTGGATGAGGTGCTGCCCTACACAGGCCAGTTCTGTGGCAGAGCCCGGGTCCACACAGACTTTGTCCCCAGTCCCTACGACACGGAATCACTTAAACTTAAGGTGGGGGATGTGATTGAGATAATCAGCAAGCCTCCTGTGGGTATATGGACAGGCATGCTGAACAACAAGGTGGGAAACTTTAAGTTCATCTACGTGGACCTCATAGTAGAGAAGGTTCCTGAACTGCCTCAGAAGATGAGGACACACAGGAGGAGCAGGAGACCCCGTCCCAAAACGCTACAGGAGCTCCTAGAGCGCCTCAATCTGGAGGAGTATGCCTCTTCACTGCTCCTGAATGGCTATCAAACAGTAGATGACCTGCAAGAGCTGAAGGAGAAGTATCTGATGGAACTCAATGTGACTGATCCTGAACACAGACATCTTCTCATGGCAGCCATCGAGTGCCTCCAAGAACCCCAAAGTGATGGTGAGGAGGGAGAGTTAAACCAGGATGCCAAGTCCCCGACTGAGAGTGTTAAAGCGGACCTGAACGACTGCCCCAGAGACTCTGGCTGTTACATCCCTTCGGACTGCTCAGACAACAGCAAGGAGACAGACATCCACCTGCAAGCACTGCACCATCATCCTCCCATGGCTCAGACCTAACCTAAAAATGATCGATGTGGATCGATGCAATTCACCCAGATCATGATCTAATGTGAAAGCCCTTTTCTGCATTACAAGAGCACTCCTATTTGCTTTCATACTGCATTTAGTATCTGTAGCCTATGTGGCTGGCACTGCAATTTTATGCATGAAGCTACTGTACACAATTTCCTGTTCTAGTGAGTTGGATTGGCTGCTGGTTTGTAAATGTTAATGATGATGTAGCCCAAGCCTTTCAAATCATTGACATTGGACCTGTGAAATCATCACAGTGGGCTAGGCTTTGTTTTTAGCACAATGTGCAATGTCAACTTTACTGTGTGTGGGTGTACAGTACAAGAGGTGCCTGTGGAAATGGGAGAGATTAAATACAGgcaggtcacccatgatacaagtcagttTTCAATGTCCATACATGTCTGAGGAGGTCGGGAGAGGACGTGGAAACTGGCTCTAGGGGTTACAGTAAGTGCTGTTATCTTTAAGTAGGTATTGTGGACAGGTATGGCAGATGTGCGTAAGCATCTGCCTGTGGCTCCAAAGGCTGCATGTTTGAATCCagcaatagaaagttgtttttgatattttgCTTTAagcctatccctaaccttaacccttaccttaaccatttggtgttaatgcctaaccttaagacttcagagttaatacctaaaaTTTAACCTTGGAATTATACAGAGAAGTAActaaacactttgacgtttgatGTTGGGAATAACTTCAAAATGTCATGTttaagaaacatggatgaacgtctaattctgatgtgCGACTGCGAGAGCTTGTTGATTAAATGAGGGTTTAAAGGATTTTTGTACTGTATCTTATGGTTTTGATTTATGGTATTATTTAACATTTTGTTAAAGTGCTTTGAGAGTGAGTAGCATACTGTCAGTTTCTTGAATGCTCTCCTTCATTAAAGCAATTGTTACACAAATGTATTATTGAAATGCAGCTGTTAAATCATTTATGGTGAGAATGGCACACAGGGCAAAATCATTTTGGGCTGAAGTTTCGATGAGAAGAACAACCAGCAGAAGTATGgcaacatatacagttgaagtcggaagtttacatacacttaggttggagtcattaaaactcgtttttcaaccactccaccaatttcttgttaacaatccATA

Function

GO: NA

KEGG:

id description
K23707 SAMSN1; SAM domain-containing protein SAMSN-1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1207684 lncRNA downstream 88086 31216510 ~ 31216837 (-) True G1060052
TU1207683 lncRNA downstream 88592 31216115 ~ 31216331 (-) True G1060051
TU1207187 lncRNA downstream 231169 31073492 ~ 31073754 (-) True G1059613
TU1207110 lncRNA downstream 238229 31066468 ~ 31066694 (-) True G1059546
TU1207068 lncRNA downstream 298336 31000157 ~ 31006587 (-) True G1059505
TU1207805 lncRNA upstream 69272 31402700 ~ 31403048 (-) True G1060173
TU1207813 lncRNA upstream 79854 31413282 ~ 31413519 (-) True G1060181
TU1207814 lncRNA upstream 80598 31414026 ~ 31414242 (-) True G1060182
TU1207815 lncRNA upstream 81540 31414968 ~ 31415269 (-) True G1060183
TU1207817 lncRNA upstream 83874 31417302 ~ 31417614 (-) True G1060185
XM_021623490.2 mRNA downstream 69885 31229547 ~ 31235038 (-) True LOC110537441
XM_021623489.2 mRNA downstream 69925 31229547 ~ 31234998 (-) False LOC110537441
XM_021623488.2 mRNA downstream 89424 31206763 ~ 31215499 (-) False LOC110537440
XM_036937392.1 mRNA downstream 89424 31206763 ~ 31215499 (-) False LOC110537440
XM_036937393.1 mRNA downstream 89424 31206763 ~ 31215499 (-) True LOC110537440
XM_036937400.1 mRNA upstream 379820 31713248 ~ 31738374 (-) True LOC110536848
XM_021626107.2 mRNA upstream 504458 31837886 ~ 31840018 (-) True LOC110539140
XM_021623509.2 mRNA upstream 564182 31897610 ~ 31900587 (-) True LOC110537451
XR_005034946.1 mRNA upstream 626199 31959627 ~ 31961527 (-) False LOC118937661
XM_021623519.2 mRNA upstream 804571 32137999 ~ 32300172 (-) False LOC110537458
TU1207180 other downstream 234063 31067585 ~ 31070860 (-) True G1059610
TU1206894 other downstream 531116 30738076 ~ 30773807 (-) True LOC110537432
TU1206840 other downstream 668201 30635058 ~ 30636722 (-) True LOC110537425
TU1206775 other downstream 852710 30447392 ~ 30452213 (-) True LOC110537417
TU1206714 other downstream 969667 30334827 ~ 30335256 (-) True G1059183
TU1209063 other upstream 657782 31991210 ~ 31992555 (-) False G1061331
TU1209066 other upstream 657782 31991210 ~ 31992441 (-) False G1061331
TU1209059 other upstream 657956 31991384 ~ 31992555 (-) False G1061331
TU1209065 other upstream 657956 31991384 ~ 31992441 (-) False G1061331
TU1209064 other upstream 658273 31991701 ~ 31992441 (-) True G1061331

Expression Profile