RNA id: XM_036939504.1


Basic Information

Item Value
RNA id XM_036939504.1
length 8181
RNA type mRNA
GC content 0.51
exon number 12
gene id LOC110537454
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 31971901 ~ 31995685 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cagatggcTACAACAATGACAAACTGCCATGTGGGAAATCGTTTTGTCCAACGAACCATGGTGGAATTagccattactattgctctctatatGACTCATTCTGCACAGAGATGTAAACAATGGTTAAATAATTGTCATCGATCTGACTTGGAGCCAAAAACCCCTGAGGAGTTACACAATTCCTTCCAAATTTGTGCAAATCATTTTGAGCCTTCCTTGATTTGTCGTGACAGCACTTTAAGAACATCCTTGAAAGAGGGTGCTATTCCAACCAGATTTGATTTTACAAGCCATTTgaacaatccatcaggccacaaACGGAATAAAAGAATAAGAGAACCTGCTGAGGCAGAGCTTGCATCCTTGAAGAAAGCTAAAGGGGATTGGTTTGAAGATGATGCTCCATCTGAGGTGAAAGATAAACCAGGAGAGAATAGCGCAACATGTGATTTACAGCAAGAGGAACAAAAGAGAGAGGATGTCGCTAACTCCAAAGCAAAGGAAATCCTTAAAGTCTACTTTAAGGAAACCCTTGCCTTCACTGGATTCAGCATAGGGAACGATGCAAACCCCAACACAGATGAACCGATGGGAGACCACAGAGGACAACAGTCTCTCAACCCCATCTGTGTTGAAAAAATCGACCAGAAAGAAGTCCTCCAGTTCAGTGAGGACCTCATGCGGGAGGAGATCCGGAACAGTTTGAGGTTGGCACGCTTTTTCTCCATCCTGCTTCAAGATGTGACAAACATAGAGGGAAAAGATCAGATCCCAGTTTTCATCAGGTCCGTCACCGTGGCAGGGTTCCCCCAGAAACACCTCATGGGTTTCCTGCCCTGTTATGCAGATGCTGAGGGTCTGTTTTACATGCTGCTCTCAGAAATTCGGAATAAGTGGGGGCTGCGGATGGAGCATTGTCGAGGACTTACCTACCTGACCACAGGTGGTTTATGTCAGAAAATGAAGGATCTCACCAGCAGGATTCTGCAGGAGTTTCCTCAGGTAGTGCTAGCACCTAGTGACCCATATGCCTTTAACATGTGGCTAATCCGCTCCATGCCCATACCTTATATCCAGAAGGTTGTGAACACAGTGGAGGACGTTGCCAAAATAATTAGAGGATCCCCAGATCTTTGGGAAAGACTGGAGGTGAAAATCAAGTCTTCATACAGCCACCTTAAAGGTGAAGTGGACAGGATCATAGAGGCTTCCCAGAACACCTGGGAGTATGGTGTTGATGCCTTCCAGACCATGTTGGACATTCTTGAACCATTCCTCGCCTGCATCAACGAGGTGTGCTCGGCTGCGAACGCAGACACCGCTACTTGTGAGCAGATGGCCAAGCTCAAGCCGATCCTGAAGAACTTCAATTTCATTATCACCCTGGTTGTTCTGAAGAATACCCTCTGTTGCGTGAGTATCCTCAACCCGAGTCTCAGGGGAGCCATCAGCATCAGCAGCACCTTGCAGTACACAATCTCCAACGCCTTAAAGCTGGTCAACAAACATCTGCAGGAGATCGCAATATTCCACAGGAAGTGGTTTTCTGATGCAGTGGGCAGGGCTAAGAAGCTGGGAGTGGAGGTTGCTAGGCCGGATGAGAGCTCACCTGAGACTGGCGAGGCAGTTGCAACTGAAACCCCTCTGGAGGATTTCTACAGAGAGACTCTGAGCAGGCAGATCTTACAGTACCTTGTTGCGGAGGTAAAGAGGGTGTTCAGCACGGAGATGGTACGGATTCTGAGATGGCTCTCATTGGTGCCGTCTTACATGGCTGACCACAATTTCAGTATCCGCAGGGATAAAGTGGCGGACGCAAACTTGAACAACCTCGCTCGGCCCGACACCTTTTACGATGAGCTTGGTTGCTGGGAGGTGAAGTGGAGACATGCCAGCAAGCGGAGGATCCTGCCCACAACAGTGTTTGCAACATTGAAAATCCCAGACATTGCATTTTACCCAAATGTGCAGAGCCTGCTGAGAGTTTTGGGCACCATCCCCTGTGTGAACGCAGAGGCAGATGTGTATGGGCAGTACAACATGGTGCTGGAGCGGTACCAGTCTTACCTGAAAGCCACACCGGAGGATAAGAGACTGTGCAACATGGCATTTGTCTATGTCAATCAAGACGTGCACTTCAATGTGGAAGACATGGTTGAGTCCTATGTGGAGAAGCATATTGACATATTGCAGTTTTTGCATATGGATGATGAGGTAATAGAGATGCAGCCTGACGCTGAACCTGTCTCTGAGAATGATGGGAATCACACTCTAAAAGAGAATGTACAAGAAACACAAGAAGAACCACAGGACATACCCTCTGAGATGGAGACCGAGAGAGTGGGGCAACCGAAACTCCCAGCCACAGAAACTAATAAGGAGGCACTCAAATCTGCTCTGCAGGTTGCTGTGACAGCTGCATATAACAGCCAGAGCAGACAGCCTGGTGAGGCCTCTGCTGAACAGGATGGCGAGGTGGAAGACTCATTGAAGTATGTGTCAAAGTCTGAGATGGAAGAAGTTCTTAGAGTATGCGAGGATGCTGTCAGGGAGGGAATTCTTGTGGAGGTGGGCACTTCCTTTTTTTCTCTGTTCATCGACCGTGTTGTGAAGTTAGGGGAGAAAAaacatcttcctctcttcctcaggTTTGTGGACAGTTTTGATGTCATGCGATTGGAGCTCATGGGATTTCTGGATGTGGATCTTGACTGTGATGCCATGTCAGAGCGCATATTGGAAATTGTCACCAAAGAGTGGCATCTCGATTTGTGTTACTGCAGAGGTCAGGCCTACCTAGGGTCCGGTGATGTCTCCTACAAGCTGAAAGCATTTGCCTGCAAAATCCAAGAAAAGTACCCCCTTGCAATATGCACACACTGCTCTTGTTACTCATTTAACATATGGTGGTCAAAATCCACCCCTGTGTCATCAGTCAAACGGGCCCTGGATGTTTTTGAAGAGGTTTTGATGTTTTTTGGGAGCATGCCTATGCTTGAGAAACAACTGGATCATGTCATTGCATTTGGACTTAGGGAAAGCTATGAAAAGGTTCAAGAATTGCAGGGGAAGTTCTGTACCGTCTGGCAGGAGAAGCATGATTCCTATGAAGTTTTTGTGCAGATGCTGGAGCCCCTTGTCGAATGTTTGGAGAAAATCAAGAGCAACCCACAGAGGTGGAAATCCTCATTCTCTCTAAAAGCTGGAGCACTGCTGCGTTTGATAAGGGACTTTGATTTTATTGTGCCCATGGTAGCCCTGAAGAACACCTCGTCCTTCACCAGGGAACTGAGTGCAGGACTCCAGAAGGATCATTTCAGTGCAGCATCCCAACTCTGCCAGATCAGTGGTATAGTGGCTACTCTTAACAGGGTCAAAACAAACATCAAAGTATTTCACCAGAATTGGTTTGATGAAGCTTGTGCGCTCGCCCAGAGTCTAGGTGTGCAGATAAAAGTGCCTGATAATTCCTCTGCGTCCAGGGATAGCATGATGAAACCAGCTCTGTATTACAAAGATGCACTAAGTGTGCCCCTAGTGGACAACCTCACCAATGCTGTTAAGGATCATTTCTCTGAGGACCACAAGGAGGCCCTAAACTTCCTCTCCCTGGTTCCCTGCTCTGTGACTGTGAGTTACATGTTTGAGATCCTGAGGTCAAAGCCTCCTCTCTACGCCAGTGATCTGCCTGACTCCGACAACTTCTTCACTGAGTTGTGCTGCTGGAGGGTGAAGTGGAAGACCAAAGTTGCATCCGTGACCATCCCAGACACTATCTTTCAGACTCTCCGTCTGCCACTCATGCAGTACTTTGGGAACATCAACACACTGCTGAGGATCATGTCTGTGCTACCCAGCACAGTACTGGAGAACTGTGGGGAAGTGATGCGCCACAAGATGTTCCAGGAATACCTGAGGAACACCAGCCCCAAGGACAGGTCCCCATGTCTGGCCATGCTGCAGGTGGGAACCAACTTCAGCAGAGATCTGGACCGGATGGTGACTAAGTGCTTGAAGGTCACTCCGCAGGCTTTAGAGGGCATCTGCTTGGATAAAGAATCCAAAAGTCTGATGAAGAACTCTGAAGCCAACATGGAAGTCGATCATGGCAAAGATGGAACAAAGGACCTTGAGAATCAGTCTTCTGACAAGAAAGAGAACCAGGAAATGAAAGCGGTGGATGAGAATGGGCACACTGGAGATAATCGACAGAGTTTGGAAATGGTTTTCAGACTGGCTGCACGTCTAGGGAAAAAGAAGTGTCAGCTCTCCGAACTCTCCAAAGAAGATCAAGTCCTTCTCATCCAGGATCTCGGCCTGTGCCACTGGTTTGGAAGAGATGGCAAGTTCACGCTTAACGTAGGAGAGGAGGAAATGGTAGAGCTTCTCACAAAATCCATCAGGGAAGTCATACTCTTAGAAATACAGGAGTCCCCCTTCTTTTCTCTTATCACAGATAAACCTGTTGTAATTGCTAATAAGAGCTATCTGCCTGTCTTTGTCAGATATGTTGGGGAATGTGCCCCCAAGGTAGAGCTCATTGGTTTTTTGCGATTTTTTGAAACCTGTGACGTTGATGTTCAAGTCAAGAATCTTTCAGCAACTATAATCGAAGACTGGGGATTGCCGATGAGTCAGTGTCGTGGACAAGCATTCATGCGCATGGGCTCAGGTTGTCACAGCCTGAAGAAGATGTCTTTGGAGTTCCTCGAGAGCTATCCTCTGTCTGTCATCACACCCAGTGAGTCTTGTGGTCTTGCCTGTTGGCTAGCAGGAAGTGTACACTGCCCACCTGTCACAAAGATGCTGGGAATTGTGGAAGATCTTCTACTGTTCTTTGACCAGTCACCTGGTCTAGAGGCAGAGCTAGCACAGGCCGTGGATGGGTTACTGAATACACCTCGGGAGGCCTTGGAGGAGATTCCAGAAACCTGTTGCTCCAGGTGGAAGAAGAGGGAGGACTTTTTTGATCTCCTAGTCGACACATTGGAGGGAGTCTTGAGTTGCCTGGATTCAGTTAGTTCCAGCGCCACGGGCACTATGTCGCTACATGCACAGGTCCTCGCCACTGCTTTGAGAGAGATGGATTTTGTCGTCACACTTGTAATCCTGAAGAACGCATGTTCTCCTCTTCGAAACTGCAGCACTGTTTTCCGCTGTGGTAACCCTGCTGACATCATCTGTGAGGTGGAGAAGATCGTACCAATCATAGAGACACTGAACAAGATGTTGGAGAACATAAgcactgtacacacaccttgGTTTGAAGAGGCATTCCAACTAGCATCCAAGGTGGCCCCTCAGCAAGTATGTTTCCCAGAGGAAGCTAACTCTTATGAGTCTCCAGAGGTGTACTACAGGGACAACTTTAGTGTTCCTGTACTGCGCTGCCTCATTGACGAAATGAAGTACAACTTCTCCGACAGTCATTTGAAAGCCTTGAAGCTCCTGTCTCTTCTTCCCACCTGCAATCCACAGCCCATTTCAGAGCCAATCCGCGCAGAGTCCACAGATAAGCTATACAGTCTCTACCTGTCTGACCTCCCTGATCCTGACACAGTAGAGCAGGATATCAGTAACTGGGCCACAGTGTGGAAAGATAAATATCAGGACATGTCACCACCAGCTTCTATCTCTGAGATACTGCTTCACCCAGAATCTCAAAGCCATCCCACAGTGACAATGCTGCTCAGACTGGTGGCTGTTCTACCGAGCGTCAGTATGGAGTGGGACCTGATGAAGACCACCCTGAACTCCATGAGGGCTCTGCTGAAGAGCACTGTCTGCAAGGGCAGCAAAACCGACACCGTGATGCTTCTCATGCATTACCCAACTGTTCAAAGACTAAGGGAGGTCATTGAGAAGTGCATCGAAGTTGACCCAGAAAGCATCCCATGTCTTGAGCAGGTGAAGAAACAAATGAAAGGTCTGAAGCTGGAAAGTGATTTCAGAGCTTTTGATGTAAACCCTGATGAGAGACATGAGCAGACAGTTGAGGAACACCAAGCTGATATGGCAGAACAACCCCTTGCTGGAGAGTTGCAAGAGGAGGACGGCGTGCTGATGGCGGAGGACGGCGTGCTGATGGCGGAGGACGGCGTGGCGCTGGTGGCGGAGGACGGCGCGGCGCTGGTGGCGGAGGACGGCGCGGCGCTGGTGGCGGAGGACGGCGCGGCGCTGGTGGCGGAGGACGGCGCGGCGCTGGTGGCGGAGGACGGCGCGGCGCTGGTGGCGGAGGACGGCGCGGCGCTGGTGGCGGAGGACGGCGCGGCGGAGGACGGCGCGGCGGAGGACGGCGCGGCGCTGGTGGCGGAGGACGGCGCGGCGCTGGTGGCGGAGGACGGCGCGGCGCTGGTGGCGGAGGACGGCGCGGCGCTGGTGGCGGAGGACGGCGCGGCGCAGGAGGGCGCGGCGCAGGAGGGCGCGGCCCAGGCGCAGGAGGGCGTCGCCCAGGGGCAGGCGCAGGACGGCGTCGCCCAGGGGCAGGCGCAGGACGGCGTCGCCCAGGGGCAGGCGCAGGACGGCGTCGCACAGGGGCAGGCGCAGGACGACGTCGCCCAGGGGCAGGCGCAGGACGGCGTCGCACAGGGGCAGGCGCAGGACGGCGTCGCGCAGGGCGCCGTTGCCCAGGGGCAGGCGCAGGGCGGCGGCGCGCAGGACGGCGTCGCACAGGGGCAGGCGCAGTACGGCGTCGCACAGGGGCAGGCGCAGGGCGGCGTCGCCCAGGCGGAGGATGGTGTTGTAATGGTAGAGGACAGGGTCGTAGGTCAGAGGCAGGCTATGTCTTTCTATGACCCACCTGTGCGTGAGGAAATACTTAAGGAACTCTGGGACTCACAGTTCTTTACAATAATAACGGAACAGGCGGTTGAGATTGAGGGACAGCTCTATGTCCCCCTGTGCATCAGGTACTTGGACAAACAGGACACTCAATGCGAGGAGACTGTAGCTTTCATCCCGTTCAGCCAGGACACTGCTGTCTTGGCTGATGCTATTGAAACAGCCCTATCAGAGAAATGGGGGCTCAATATGGCATACTGTAGAGGGCAAGCTTTGCTAAGTGTTGGTGAGGTAGGATCTCGGATGAGAGCTGTATCTGCTGTAATAGCCCAGAAATACCCCCTGGCCATGCAAATGGTCAGCTCTGCTGTGTCTCTGAATGTGTGGCTAGCCAGGTCATCTCCTGCAGTGGCAGCAGCAGACTGTGCAGTGTCTGTAGAAAACATGTTACAGTGGCTCACAGAGGATGCAGAACGACAGATCAAACTGGAAGAGGTGATCATTGCCATATTCCAACATGATGAGGGGAAGGGTAATGAGCTTAGGGACAAGCTTATTAAGAACTGGGAGAAGAGTCATGATATGCATGATTTGATGGTAGAGCTCCTGGAGGTAGTCATGCTGTGCTTGAATGAGCTGAAAAGTGAGGAGAATAGCTTAGGGAGTGGCCAAGCACTGCTTTACTTCGATAAAGTCAGACGTTTTGAGTTCATCTTCACGGCTGTCGTGCTGAAGAATGTCCTAAGCTCGACCAAAAAGCTGAGCCAATCTCTTCAAGGAAAACCCCTAGATGTGTTGCTAGCTATGAATAGCTTGCCCGATCTCCTAACTTCCCTCAATGAATTGAAGAGCAATATCGACACACATCACAAGGCCTGGTTCAAGGAAGCTGTCTCTTTAGCTTCCAAGCTGCAGATAACGTTGTTGCACTCTGCGCTGCTAGAACCCCTGAGTCAGTTTTACAAAATGGCGGTGAGTCAGAAGGTGATAGAGCACTCCATTGCTGAGGTCAGTGAGTTCTTCACAGAGAAGGTCCTCAGTACCCTGAGGTGCCTGGAGATTGTGCCTTACGCCATGTCGAAGCTAGAAAACAGCAGTGTAAATGCTCACGTTTTACGCATGTACAAAGATGACATGCCTGACCTGGTCTCACTCCCAACAGAGATGAAGTCTTGGAGAGAGAAGTGGTTGGATCCCATGTCCGGGTATCTTCCAGCCACTGTACTCGACACTCTGAAGGCATCAGACATTAGGAGCTTTAGTAACATTGAAACCCTCCTAAGACTCCTGGTCATCCTACCATTTTCCCGGAGGGAGAGTACCTTCAGGCAGGGAAAGAGAAGCCTCCAGGGGTTCATACAACAGGAGACCAGGTCTCTTTCTGAACTTCATCCTCTGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1208150 lncRNA upstream 4445 31961376 ~ 31967456 (+) True LOC110537456
TU1208178 lncRNA upstream 67808 31903347 ~ 31904093 (+) True G1060536
TU1208177 lncRNA upstream 69305 31902373 ~ 31902596 (+) True G1060535
TU1208175 lncRNA upstream 73177 31898521 ~ 31898724 (+) True G1060533
TU1208173 lncRNA upstream 76490 31895157 ~ 31895411 (+) True G1060531
TU1208245 lncRNA downstream 65315 32061000 ~ 32080346 (+) True G1060602
TU1208371 lncRNA downstream 308519 32304204 ~ 32321208 (+) True G1060718
TU1208468 lncRNA downstream 439872 32435557 ~ 32438057 (+) True LOC110537465
TU1208583 lncRNA downstream 617565 32613250 ~ 32614551 (+) True G1060911
TU1208604 lncRNA downstream 664007 32659692 ~ 32660196 (+) True G1060932
LOC110537456 mRNA upstream 2959 31962548 ~ 31968942 (+) False LOC110537456
XM_021623515.2 mRNA upstream 10985 31955273 ~ 31960916 (+) False LOC110537455
XM_021623517.2 mRNA upstream 10985 31955541 ~ 31960916 (+) True LOC110537455
XM_021622430.2 mRNA upstream 39263 31917035 ~ 31932638 (+) False stt3a
NM_001160700.1 mRNA upstream 39267 31917123 ~ 31932634 (+) True stt3a
XM_021623518.2 mRNA downstream 9469 32005154 ~ 32027744 (+) True LOC110537457
XM_036937404.1 mRNA downstream 356067 32351752 ~ 32382873 (+) False LOC110537461
XM_036937405.1 mRNA downstream 356067 32351752 ~ 32382873 (+) False LOC110537461
XM_036937406.1 mRNA downstream 356067 32351752 ~ 32382873 (+) True LOC110537461
XM_021623523.2 mRNA downstream 408630 32404315 ~ 32410155 (+) True LOC110537463
TU1208110 other upstream 160554 31811062 ~ 31811347 (+) True G1060470
TU1207289 other upstream 762544 31207629 ~ 31209357 (+) True G1059685
TU1206610 other upstream 964835 31000227 ~ 31007066 (+) True G1059091
TU1206461 other upstream 1092790 30848538 ~ 30879111 (+) True LOC110537434
TU1206279 other upstream 1455011 30516081 ~ 30516890 (+) True G1058787
TU1210205 other downstream 1364049 33359734 ~ 33366249 (+) False G1062404
TU1210206 other downstream 1364049 33359734 ~ 33362605 (+) False G1062404
TU1210369 other downstream 1512634 33508319 ~ 33508863 (+) True G1062537
TU1210496 other downstream 1662593 33658278 ~ 33661949 (+) True G1062648
TU1211387 other downstream 2771339 34767024 ~ 34770876 (+) True ubb

Expression Profile