RNA id: XM_036939653.1


Basic Information

Item Value
RNA id XM_036939653.1
length 1267
RNA type mRNA
GC content 0.54
exon number 2
gene id LOC118937881
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 32472658 ~ 32475120 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGATGCACATTCAATTGCACGATCACCAatataccacagaagaagaagactgaaggaggagagactactagaaactaactaggtttccccttttatctgttgattaattgtcagagtagagaacACATGATTTTGTGTGACTCAAAATGGGTTGATATTCTACAAATATCCAGGGATCTTGTACAGTTCAGTGTGTGACATAAGACAAATGAGCTCCTCAGCCATGCTGGACACCACTTCCACGCAGATGCAGGCTCCATACATGTGGCCTCAGCAGCCCAAGGGGTCATGGGTCCACAGTCATGCCCAGGTGTACTACCCACAgacatggacagggaggaccCAGGGCTACCTATCCCATTCTGCCACCCAGGCCCAACGGGTGTCTGCCCAGTACATGCACAGTGCGCTCTACTGGCTGCCTCAACACCAGCTACACCAAGACCAGCGTGCCACACAGTGGAGGCCTGAGTCAAACAGGATGGCCTACCAGGCTAGAGTCCCCTGGTCCTACAGGCAACACCTCACAGGAGGGCCCATGGATGCTAGGATGTACCCTATCTTCTCCACAGAGCCACAACAAGCCCCCACTGGCCTCCTCCCTCAGGCCGGAGACAGCAGCACTCACCTGGCCCCTCACCATCAGCTTGGAGGTCACTTCCAGGCAGGCTCCAACCACCCTCTGTTCGAGTTCCAGAGCTATAGCCTCAGGGCTGCAAGAGTCTCCCAGGCCTCTCTGACCCAGGTCACCGGCCCCAGCCTGTCCCTGCAGGGGTTAGGAGATAGTTCCCTGCCTGCAGTCACCTCTCTGGAGGAGGCTATGAAGATTTTCCACTGTGAGTCTGAGGAGGAACCCAGCCAGCAGGCTGAGGTTGGGCTGAGTGTTCTGGTGCCACAGGGAGTGTTGTCCAGCCCCGCCCAAGAGGATTCAGGCAGGGGTCAGTGTCCCTCCACCCTGGATCACTCCCTGGACCAGGAGGACCTAGAGGCCTGTATGCAGCGCCTGCTGAAGTCGCAGGGATCAGAGGGGTCTGTGGGCATAACCGCAGCAGGGGAGTCTGGCATGGAGTTCTTCTATGAGGTAGACAGCCTGGGCAGCCTGTGTGACCTCCAGTTGTTTGGACAGTGTGTGTCTAGCAGCAACACAGAGGAGGGCAGTGCCAACAACATGGATAACTGAAATAACCACATCTTTTAGCCTTATTTTCATGTTCATtcattattattgttttattaccAAAGCATTATCATTAAAAATGGATTGTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1209323 lncRNA downstream 92551 32377214 ~ 32380107 (-) True G1061574
TU1209232 lncRNA downstream 201478 32187869 ~ 32271180 (-) True G1061483
TU1209177 lncRNA downstream 347508 32122866 ~ 32125150 (-) True G1061430
TU1209035 lncRNA downstream 493509 31978924 ~ 31979149 (-) True G1061325
TU1209034 lncRNA downstream 493955 31978329 ~ 31978703 (-) True G1061324
TU1209427 lncRNA upstream 9598 32484718 ~ 32485654 (-) True G1061666
TU1209439 lncRNA upstream 31815 32506935 ~ 32507183 (-) True G1061676
TU1209430 lncRNA upstream 58049 32533169 ~ 32534621 (-) False G1061669
TU1209431 lncRNA upstream 58049 32533169 ~ 32556542 (-) True G1061669
TU1209474 lncRNA upstream 75421 32550541 ~ 32579617 (-) True G1061708
XM_021623527.2 mRNA downstream 56379 32414563 ~ 32416279 (-) True LOC110537466
XM_036939505.1 mRNA downstream 71393 32390534 ~ 32401265 (-) True umodl1
XM_021623521.2 mRNA downstream 128555 32333964 ~ 32344103 (-) True LOC110537460
XM_021623520.2 mRNA downstream 148985 32304197 ~ 32323673 (-) True LOC110537459
XR_005034947.1 mRNA downstream 172487 32157884 ~ 32300171 (-) False LOC110537458
XM_021623532.2 mRNA upstream 181617 32656737 ~ 33146644 (-) False LOC110537471
XM_021623533.2 mRNA upstream 181617 32656737 ~ 33146644 (-) False LOC110537471
XM_021623538.2 mRNA upstream 181617 32656737 ~ 33146644 (-) False LOC110537471
XM_021623539.2 mRNA upstream 181617 32656737 ~ 33146644 (-) False LOC110537471
XM_021623536.2 mRNA upstream 183123 32658243 ~ 33143866 (-) False LOC110537471
TU1209063 other downstream 480103 31991210 ~ 31992555 (-) False G1061331
TU1209059 other downstream 480103 31991384 ~ 31992555 (-) False G1061331
TU1209066 other downstream 480217 31991210 ~ 31992441 (-) False G1061331
TU1209065 other downstream 480217 31991384 ~ 31992441 (-) False G1061331
TU1209064 other downstream 480217 31991701 ~ 31992441 (-) True G1061331
TU1209841 other upstream 564365 33039485 ~ 33086066 (-) False G1062051
TU1209842 other upstream 564365 33039485 ~ 33086066 (-) True G1062051
TU1210448 other upstream 1037805 33512925 ~ 33513375 (-) True G1062603
TU1210388 other upstream 1042645 33517765 ~ 33532641 (-) True med13a
TU1210670 other upstream 1231352 33706472 ~ 33707659 (-) True LOC110537478

Expression Profile