RNA id: XR_002475633.2


Basic Information

Item Value
RNA id XR_002475633.2
length 3211
RNA type mRNA
GC content 0.42
exon number 2
gene id LOC110537479
representative False

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 33709328 ~ 33746715 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctctgcccctctccctccctcactctctctctctcaccctctctccactgctccccctctctttctgtggCGCACTTTCACTTTCTGCCTTGTTTACCTTCTCTCACTCTTggccctccctcctttctctagAACAGAGTAGGGTGCACACAGTGCACACGCTCAacctcctactgtctctcctacttcgtttttctctcactctgcctGAGTCTCCCAtggctgactgtctctctgtcttcagtGAAGCTggcgctgtctctctgtctgtgtgtctgtcccctGTGTGCAGCACATGTTGAAGAGCTTCATGTGGTGTGCCTACTGGGCAGGCTTGGGTAACCTGTCCTCTGTGGGACTGGGGACTGGCATGCACACCTTCCTCCTGTACCTGCAGTGCGGAGCGGAAAAATGGGGGCTGGCTGGCTCAAGATCTGGGCTCCCAAACATCTGGTAGTCTTTACATTTGTTCTGAGAGCATTATTAACACTTAGCCACCCATCTGTCATTTGGGAGCAGCGCAGTCACAGTCCCATTGCATCGCCCAGTGGAGCTGAACTGGAAACTGTCCTCCATTCTGTGTCATGGAGAGCACACTCAAATGTCATTTGAGACATTTTTTATATTCAAATTTTTGTTGGGTGACCTGACTTACTTTCCAAGACGCCTGTCTGTTTCAAAGGAGGACGTCGCCATCTTATGGCCTTATTGATGGATCAGTAGATTTTCAGTGCTGTTTGAGGAATCCGTTCAAGTTTCCTGCTTTTGAATGTGGAGCTGATTGAGACAGCTGGATTGATGGGGGCTGTTGCAGGGGCTGAATTGAGTCATTGTGAGTTTGTGCTCCCCTACCCACAGAGGCCTCAGTAGAACCATAGATGTATGGTTAGAACACTGCTCCTTCTCTAATCTATCTTGTCCATGTTCACTTCTACAGGAAATGCTCACTACTACAGGAAACCATATGAATGTTTGtaatgatttttgcaatgtttgaTGGTTGCAGCGACttgtttatagaaatgtttgtgGTCATACGCACATCCTTAAAAATGTAGGTGCTGGGCTAATAAAGAATACTTGTAAAGAACCGGAAAGCTCGCACACTGTTTATGCTTCCCCAATTCACCGCTTTCTTGTCAACGTGACTTGTTTCCTCTTTCTAGATACGGTCCTTCTTCTTCACAATGGTTGATGCAGCTTTCCTGCTTGGGTTGAGGGGGTTCACTGTGAACCCATGCCCCTTACCTTCTGTGAGCAGTAGATGGCGACATTTGTCAGTGAATGTGAGTCAGACGCTGCATGCAATGTATGTAGCTGTACTGGCCATGTTCGAGAGGATCAAAACTGTaatgtatcatgggtaaattgtgactgattgatctacaaataataatgagtaggtatttatgatgcaaggtacATTGCAGATCACTCAGTCGACAGTCGCCTGCACTGTTGGCTGCGATGTTAAACAAGCtcacccagcaaaccaaaattggttaGGTCATGCAAATGTACTCATAACACATAAACTGTCCCGTTGATGATAATTCTagaatgtttgtataaaacatttgcctAATGTTGCAAGAATGTTCCTCAAACAAATGTCATCTGTTCTtcaaaggttcccagaatgtttcattagggtgtgggaacagtctggtgagaATATTGTGGGCACATCACAAAAGATATGTTTCcgaaacacaaaaactgtccagttgtgcagaTGATTCTACAATATTTATTTAGGGTGCAAAAAACACCTGATGTCACACGGATGTTCCCAGAATAACATTTAGTCTGTTCTTTAGAGGTGCCAATAATGTTTCATTAGGCTGTGGGAACATTGTGTGTGTATGATGAGAgaggttcccaaaacacaaaatatgCTCAGTTGTGATGACATTCCTATAATGTAAGAATGTTGTCAGAACACCTGGTCTAACTTCTTTAAAGGTTCCAGGAATATTATATTAATTCATGGGAGTTGTCTGGGATGTTGCACGAATATTCCCACAGAACATTCCCACAATGTTCCACAATTTACAGATAAGTCATGACGTTCATAGCCTATTTATTTTAGGTTTGACATATTCAATATACATTTTATCTTGTCTTGGAGGTCCTCAGAAACATGTCAAGACCATTTAGAAAATTATAGATTTAATTTTTACCTTATATTACCACAACATTCTCAGCATGCAAATGTGTAGCTCCTTAAAGCAGATTGGAATACATCCTCATTATATTTCTCTCCACGTTTAATGGACGTCCAGggggtttttcctagccaccgtgcttctacacctgcattgcttgctgtttggggttttaggctggttttctgttcagcactttgagatatcagctgatgtacgaagggctatataaataaatttgatttgatttttgattcaCATTTGAAGGTGATATAGAGACACATGGCATTTTAATTCATAGGACATTTGAACAGCATTTAATCATACAAACACAACTATATTTTTTTACACTTCAAAAGTTGACAATCTGCTTGGTTTGGTTCACATGCCAGGTTTTTTTTATCCTCTGCACCACCAGGAATGCTCTTGTTTTTTTCACTATATAGCCATGGCAGTATGAAATCAGGAATTCCATGCATCCTTTTTTGTCTTCTTAGACATATCTGACCCGGGGAAATAATGGTAACTGGGTTATTCACCCATCCTCTTTATATGCTGCGTACATCTGGGCTCATATTTACAAGGTATCCAAGACTACGAGTGCTGATCTTGGATCACTTTTGCTTTTCAGATCATGAAaaatgatttaacctttatttaactaggcaagtcagttaagaacaaattcttatttacaatgacggcctacaccggccaaacgcggacgacgctaggccaattgggcgccttatgggactccctatcacggccagttgtgatacagcctggaatcgaaccagggtgtctgtagtgatgcctcaagcactgaggcgtcactacagaccactgtgccactcgggagcagcGGTCCGGAGTGAAAAATAAGACGGGACAATATTAAGCTTTTCAAAGTAGGACTTCCATTGGGTGTGTTTTTTATGGTTGAACAGTTTTATTTAAATTCTGCATTTCTGACTGGATTTATAAATCTGGACGAAATAAAGACATTCTTTATTTTTGGTTGATTATGTCTGAGCCTCATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1210740 lncRNA downstream 22584 33719706 ~ 33720149 (-) True G1062885
TU1210739 lncRNA downstream 26508 33715978 ~ 33716225 (-) True G1062884
TU1210737 lncRNA downstream 29932 33712504 ~ 33712801 (-) True G1062882
TU1210731 lncRNA downstream 48581 33693952 ~ 33694152 (-) True G1062876
TU1210484 lncRNA downstream 173568 33568861 ~ 33569165 (-) True G1062639
TU1210747 lncRNA upstream 3258 33749973 ~ 33752584 (-) True G1062892
TU1211590 lncRNA upstream 127653 33874368 ~ 33874665 (-) True G1063648
TU1211591 lncRNA upstream 128380 33875095 ~ 33875599 (-) True G1063649
TU1211592 lncRNA upstream 129156 33875871 ~ 33876076 (-) True G1063650
TU1211752 lncRNA upstream 368823 34115538 ~ 34150816 (-) True G1063803
XR_005034951.1 mRNA downstream 35929 33667535 ~ 33706804 (-) False LOC110537478
XR_002475632.2 mRNA downstream 35929 33669706 ~ 33706804 (-) False LOC110537478
XM_021623546.2 mRNA downstream 105187 33625763 ~ 33637546 (-) True rps6kb1a
XM_021623544.2 mRNA downstream 105332 33625763 ~ 33637401 (-) False rps6kb1a
XM_036937422.1 mRNA upstream 43940 33790655 ~ 33855472 (-) False cltca
XM_036937421.1 mRNA upstream 43940 33790655 ~ 33855473 (-) True cltca
XM_036937429.1 mRNA upstream 130674 33877389 ~ 34082067 (-) True LOC110537486
XM_021623553.2 mRNA upstream 335743 34082458 ~ 34103082 (-) True akap10
XM_021623556.2 mRNA upstream 370327 34117042 ~ 34125929 (-) True c12h11orf54
TU1210670 other downstream 35074 33706472 ~ 33707659 (-) True LOC110537478
TU1210388 other downstream 210092 33517765 ~ 33532641 (-) True med13a
TU1210448 other downstream 229358 33512925 ~ 33513375 (-) True G1062603
TU1209841 other downstream 656667 33039485 ~ 33086066 (-) False G1062051
TU1212126 other upstream 1010539 34757254 ~ 34759166 (-) False cenpv
TU1212198 other upstream 1059044 34805759 ~ 34807631 (-) False LOC110537499
TU1212199 other upstream 1059044 34805759 ~ 34807631 (-) False LOC110537499
TU1212200 other upstream 1059044 34805759 ~ 34807631 (-) True LOC110537499
TU1212669 other upstream 1472820 35219535 ~ 35260534 (-) True LOC110537509

Expression Profile