RNA id: XM_036937422.1


Basic Information

Item Value
RNA id XM_036937422.1
length 6667
RNA type mRNA
GC content 0.53
exon number 30
gene id cltca
representative False

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 33790655 ~ 33855473 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGATTGTATAAAAATGAATAGGTTTCAATGGTGAATATCCTACATCAGTTTAATCATGATTAGAAATGACCATTTTTGAAACATGAATATCAATATTCGTCCGCCCCACTGAAGTACACAGCCATTTCCGGATTGTTTCTCTCCTCTTGAGCAGCTGCCACCGCCATTGCAGGTTCAGGGTGTTCAGTGCAGCTGCAGCCGTCCGTCATCAGGGGAAGAGCGCAAGTTAACAGCAAAAGGACGAATAAAATCACCATTACATTTTCATACAAGACTTCGAGTCTACCCAATTGGACTTTAAACTAGCTGTTCCCTGGCTGTCCGGCTAGGATCTGAGAAGAAGCCGTAGTTTGTTAGCATTACTTGGAGAAtcgggaggagagcagaggaaccGTCATGGCTCAGATTCTGCCTATCCGCTTTCAGGAGCACCTGCAGcTCCAAAACTTGGGGATCAACCCGGCCAACATCGGGTTCAGCACCCTGACGATGGAGTCTGATAAGTTCATCTGTATCCGAGAGAAGGTGGGCGAGCAAGCGCAGGTGGTGATCATAGACATGGCCGACCCCAACACGCCCATCCGCAGGCCTATCTCTGCAGACAGCGCCATCATGAACCCCGCCTCCAAAGTCATCGCACTTAAAGcCGCCAAAACCCTTCAGATCTTTAACATTGAGATGAAGAGCAAGATGAAggcccacaccatgactgacgaCGTCACCTTCTGGAAGTGGATCTCCCTCAACACAGTGGCACTTGTGACTGACAATGCCGTCTACCATTGGAGCATGGAGGGGGACTCCCAGCCAATCAAAGTCTTTGACCGGCACTCCAGCCTGGCGGGCTGTCAAATCATCAACTACCGCACTGATGCCAAGCAGAAGTGGCTGCTGCTCATCGGCATCTCCGCACAGCAAAACCGTGTGGTGGGCGCCATGCAGTTGTACTCTGTGGACAGGAAGGTGTCACAGCCCATCGAGGGCCACGCCGCCGGCTTCGCCCAGTTCAAAATGGAGGGCAACACAGAGGAGTCCACACTGTTCTGCTTTGCTGTGAGAGGACAGGCCGGAGGAAAGTTGCACATCATTGAGGTGGGCACCCCACCCACAGGGAACCAGCCTTTTCCAAAGAAAGCAGTGGACGTGTTCTTCCCTCCAGAGGCTCAGAATGACTTCCCTGTGGCCATGCAGATAAGCTCCAAGCAGGATGTGGTGTTCCTCATCACCAAATATGGCTACATCCACCTGTACGACCTGGAGACTGGCACCTGCATCTACATGAACAGGATCAGCGGGGAGACCATCTTTGTCACGGCCCCACACGAAGCCACCGCTGGGATCATCGGGGTCAACAGGAAAGGACAGGTCCTGtcggtgtgtgtggaggaggagaatATCATCCCCTACATTACCAATGTGCTCCAGAACCCAGACCTGGCCTTACGCATGGCTGTCCGTAACAATCTAGCTGGGGCCGAGGAGCTGTTCGCACGCAagttcaacaacctgtttgctggGGGAAACTACTCTGAGGCTGCCAAGGTGGCTGCCAACGCACCAAAGggtATCCTGCGTACTCCAGATACCATCCGTAAGTTCCAGAGTGTGCCAGCCCAGCCGGGCCAGACCTCTCCCCTGCTGCAGTACTTTGGCATCCTGCTGGACCAGGGCCAGCTCAACAAGTTTGAGTCCCTGGAGCTGTGCAGGCCAGTCCTACAGCAGGGACGCAAGCAGCTGCTGGAGAAGTGGCTCAAAGAGGACaagCTGGAATGTTCTGAGGAGCTGGGGGACCTGGTGAAGTCAGTGGACCCCACCCTGGCTCTCTCCGTCTACCTGAGGGCCAACGTACCCAACAAGGTCATCCAGTGCTTTGCTGAGACCGGACAGTTCCCCAAGATAGTCCTGTACGCCAAGAAGGTGGGCTACACTCCAGACTGGATCTTCCTGCTGAGGAATGTGATGAGGATCAGTCCAGAACAGGGCCTGCAGTTCTCACAGATGCTGGTCCAGGACGAAGAGCCTCTTGCTGACATCACACAGATCGTGGATGTGTTCATGGAGTATAACCTGATCCAGCAGTGTACCTCATTCCTATTGGACGCCCTGAAGAACAACAGGCCATCTGAGGGGCCGCTGCAGACACGCCTACTGGAGATGAACCTCATGCACGCCCCACAGGTTGCTGATGCTATCCTGGGCAACCAGATGTTCACCAACTACGACCGTGCCCACATAGCCCAACTGTGTGAGAAGGCTGGCCTGCTGCAGAGGGCTCTGGAGCACTACACCGACCTATACGACATCAAGCGGGCCGTGGTGCACACACACTTGCTCAACCCAGAGTGGCTGGTGAATTTCTTTGGCTCCCTCTCAGTGGAGGACTCTCTAGAGTGCCTGAGGGCCATGTTGTCTGCCAACATCCGTCAGAACCTGCAGATTTGTGTCCAGGTGGCCTCCAAGTACCACGAGCAGCTCTCCACCAACTCCCTCACCGAGCTCTTCGAGTCCTTCAAGAGCTTTGAGGgtctgttCTACTTCCTGGGTTCCATCGTTAACTTCAGCCAGGATGCAGAGGTCCACTTCAAGTACATCCAGGCTGCCTGCAAGACGGGACAGATCAAAGAggtggagaggatctgcagagagagcAACTGCTACGACCCAGAACGAGTCAAGAACTTCCTCAAGGAGGCCAAGCTTACCGACCAGCTCCCGCTCATCATCGTGTGTGACCGCTTCGACTTTGTCCACGACCTGGTCCTCTACCTGTACCGCAACAACCTGCAGAAATACATTGAGATCTATGTGCAGAAAGTGAACCCCAGCCGTCTGCCGGTGGTGATTGGAGGGCTTCTGGACGTGGACTGTTCTGAGGACGTCATTAAGAGTCTGATCCTGGTGGTCAGAGGACAGTTCTCCACTGACGAACTGGTGGCCGAGGTGGAAAAGAGGAACAGGCTGAAGCTTCTCCTGCCCTGGCTGGAGGCCCGTATCCATGAGGGCTGTGAGGAGCCCGCTACCCACAATGCCCTGGCCAAGATCTACATCGACAGTAACAACAACCCTGAGCGCTTCCTGCGTGAGAACCCCTACTACGATAGCCGCGTGGTGGGCAAGTACTGTGAGAAGAGGGACCCCCACCTGGCCTGTGTGGCCTACGAGAGAGGACAGTGTGACCAGGAACTCATCAATgTGTGCAATGAGAACTCCCTGTTCAAGAGTCTGTCTCGCTACCTGGTACGTCGCAGGGACCCGGACCTGTGGGCCAGCGTGCTGCTGGAGACCAACCCCTTCAGAAGACCGCTCATCGACCAGGTGGTGCAGACCGCCCTATCTGAGACCCAGGACCCAGAGGAGGTGTCAGTCACAGTCAAGGCCTTCATGACTGCAGACTTGCCCAATGAACTCATTGAGCTACTGGAGAAGATCGTACTGGATAACTCCGTCTTCAGTGAACACAGAAACCTGCAAAACCTGCTGATCCTGACGGCCATAAAGGCGGACCGTACCCGTGTGATGGAGTACATCAACCGCCTGGATAATTATGACGCCCCAGACATCGCCAACATCGCCATCAGCAACGAGCTCTTCGAGGAGGCATTCGCTATCTTCAAGAAGTTTGACGTCAACACATCCGCTGTGCAGGTTCTGATTGAGCACATTGGGAACCTGGACCGGGCCTATGAGTTCGCCGAGCGTTGCAACGAGCCGGCCGTGTGGAGCCAGCTGGCCAAGGCTCAGCTGCAGAAGGGCCTGGTCAAGGAGGCCATTGACTCCTACATCAAGGCTGACGACCCCTCTGCCTACATGGAGGTGGTACAGGCCGCCGACCAGAGTGgtaacTGGGAGGACCTAGTGAAGTTCCTTCAGATGGCCCGTAAGAAGGCCCGGGAGTCCTATGTGGAGACAGAGCTTATCTTTGCCCTGGCCAAGACCAACCGCCTGGCTGAGCTGGAAGAGTTCATCAACGGACCCAACAACGCCCACATCCAACAGGTCGGCGACCGCTGTTATGACGAGAAAATGTACGATGCGGCCAAGTTACTGTACAACAACGTGTCCAACTTCGGCCGCCTGGCGTCCACCCTGGTTCACCTCGGGGAGTACCAGGCGGCGGTAGATGGGGCACGCAAGGCCAACAGCACTAGGACCTGGAAGGAGGTGTGCTTCGCTTGCGTGGATGGGAAGGAATTCCGGCTGGCCCAGATGTGTGGCCTCCACATCGTGGTGCATGCTGATGAACTGGAGGAACTCATCAACTACTACCAGGACCGTGCTTACTTTGAGGAGCTGATCACCATGCTGGAGGCAGCCCTGGGGCTGGAACGGGCTCACATGGGTATGTTCACTGAGCTGGCCATCCTCTACTCCAAATTCAAACCCCAGAAGATGAGGGAGCACCTGGAGCTCTTCTGGTCCAGAGTCAACATTCCAAAGGTTCTGCGGGCGGCGGAGCAGGCCCACCTGTGGGCGGAGCTGGTGTTCCTGTACGATAAGTACGAGGAGTTTGACAATGCCATCATCACCATGATGAACCACCCCACAGACGCCTGGAAGGAGGGCCAGTTCAAAGACATTATCACCAAGGTGGCCAACGTGGAGCTGTATTACAAAGCAACTCAGTTCTATTTGGAGTTCAAGCCGTTGTTACTGAATGACCTGCTCATAGTGCTGTCCCCCAGACTGGACCACTCCCGTGCGGTCAACTTCTTCAGCAAGgTGAAACAGCTGCCCCTGGTCAAGCCCTACCTGCGCTCAGTACAGAACCACAACAACAAGTCTGTCAATGAAGCACTTAGCAACCTCTTCATCACAGAGGAGGACTATCAGGCTCTGAGGACGTCTATAGATGCCTATGACAACTTCGACAACATCTCGCTGGCCCAGCGCCTGGAGAAACACGAGCTGATGGAGTTCAGGAGAATCGCTGCGTACCTCTTCAAGGGTAACAACCGCTGGAAACAGAGTGTGGAGCTCTGCAAGAAGGACAGACTCTACAAGGATGCCATGCAGTACGCGTCAGAGTCCAAGGACACGGAGCTGGCTGAGGAGCTgctgggctggttcctgatggagGACAAGAAGGAGTGCTTTGCCGCCTGCCTTTTCACCTGCTACGACCTGCTGAGGCCAGACGTGGTGCTGGAGACTGCCTGGAAGCACAACATCATGGACTTCTCCATGCCCTACTTCATCCAGGTCATGAGAGAGTACCTCTCCAAGGTGGACAAGCTGGAGACCTCCGAGTCCCTACGGAAAGAGGAGGAGCAGGCGACAGAGACCCAACCCATAGTCTATGGCACACCCCAGCTGATGCTGACTGCTGGCCCCAGTGTGCCCGTACCAGCCCAGCAGGCCTATGGCTATGGTTACCAGGCCCCTGCGGGCTATCCCCAGAACCCTCAGGCACAGCCAGGCTTCGGCTACAGCATGTGAAGGCCCTTCTGGTCCGGAGCAACCCTGGAGCCCATCCTTCATCTCCCCCCCCCACTCAGCTCAGTCCTTCACCAGCCATTACTATCTTCTACTCGCAACATACAGGGGATTCCAACAAGCAGTTATTACTCTGTTTTAATTATCGTTTTCCTTTTTGTCATGAAGGACTCAATTTCATTTCCATTGTCAAAGAAAAGGATTGGATGACAAGGATTTTTCCCCCACATTCCATTATATTTACTAATGTAATTtgtccatttttatttttatgtacaaTGAGGGGGCTTGTGGGAAGAGCGAGTCCTTAATAAAGGTTGTTGTGAAGCATCTGATTTGCACTCTGTAGTGAGAACTCATGTAGATGTGTGAGCAGCTTGTTCTGTCAGTCTGTAAAATGCATTTAATTATTGTATATTCAGAAACTAAAGTTACAATGTTCTATATTTGAACACGACTGCCGCTTCCATGAACCACAAACCAACTAGAAACACTACGTACAATACCAGTAATGACCTATACAGGGTTGAAGGGGTTGTGTAGCTCTCGAGAGAAGAAAATTGATTTTAAAATGCATACAGACATGATTTCCATCCTTCCCATTCCAAGCATATGCACGTTCTCCAGTCAGACCGTGCGGTGTAGAGATGTACTCTGCTGCGTGTCACAAACCTTTCCTCGTGCTGTAAAAAGTGCTCTTGTGTGGGACCATTCCATTTAGGAGGGATTGATTACTAGCATTAAAGAAGCCCTGTTCTTCAGTTCAGTTAGACCTATGTGTTTTACTAACTAACCACACCTTGCACCCTGCTCCAGGTCACTGTTCTGGAGTGTACAGAAGAGAGAATATAAAACATAATAGCCTCTGTCCTGCCAGgttctttttctttctttgcctgggtccaaaatggcaccctattccctacatagtgcaaaacccttatgggccctggtcaaaatgttttgcactatgtagggaatagggtgccatttgggacaggacCTATCAGTTTGCCCTCTGATCTAATTAATCACAGGACTGTGGTAATTTGGTGTTTTTATCGAAGGCTTGCGTGTATACAAAGACATTAATCTACCCTATACTCTCTAAAAACAAATGACTTTAGATTTAACAGTGCACTTAAATACATTGTGCAGAATCTCTGGATCATGATGAATGAAATGGCAGTTTTCTTTTCCACATAAAATAAAGGCTTCTTGTTTGTCAAGAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1210747 lncRNA downstream 38071 33749973 ~ 33752584 (-) True G1062892
TU1210668 lncRNA downstream 44168 33744856 ~ 33746487 (-) True LOC110537479
TU1210740 lncRNA downstream 70506 33719706 ~ 33720149 (-) True G1062885
TU1210739 lncRNA downstream 74430 33715978 ~ 33716225 (-) True G1062884
TU1210737 lncRNA downstream 77854 33712504 ~ 33712801 (-) True G1062882
TU1211590 lncRNA upstream 18896 33874368 ~ 33874665 (-) True G1063648
TU1211591 lncRNA upstream 19623 33875095 ~ 33875599 (-) True G1063649
TU1211592 lncRNA upstream 20399 33875871 ~ 33876076 (-) True G1063650
TU1211752 lncRNA upstream 260066 34115538 ~ 34150816 (-) True G1063803
TU1211881 lncRNA upstream 378099 34233571 ~ 34235794 (-) True G1063927
XM_036937419.1 mRNA downstream 43940 33709328 ~ 33746715 (-) False LOC110537479
XR_002475633.2 mRNA downstream 43940 33742733 ~ 33746715 (-) False LOC110537479
XR_005034951.1 mRNA downstream 83851 33667535 ~ 33706804 (-) False LOC110537478
XR_002475632.2 mRNA downstream 83851 33669706 ~ 33706804 (-) False LOC110537478
XM_021623546.2 mRNA downstream 153109 33625763 ~ 33637546 (-) True rps6kb1a
XM_036937429.1 mRNA upstream 21917 33877389 ~ 34082067 (-) True LOC110537486
XM_021623553.2 mRNA upstream 226986 34082458 ~ 34103082 (-) True akap10
XM_021623556.2 mRNA upstream 261570 34117042 ~ 34125929 (-) True c12h11orf54
XM_021623561.2 mRNA upstream 505799 34361271 ~ 34365249 (-) True timm22
XM_036937458.1 mRNA upstream 716692 34572164 ~ 34587940 (-) False zswim7
TU1210670 other downstream 82996 33706472 ~ 33707659 (-) True LOC110537478
TU1210388 other downstream 258014 33517765 ~ 33532641 (-) True med13a
TU1210448 other downstream 277280 33512925 ~ 33513375 (-) True G1062603
TU1209841 other downstream 704589 33039485 ~ 33086066 (-) False G1062051
TU1212126 other upstream 901782 34757254 ~ 34759166 (-) False cenpv
TU1212198 other upstream 950287 34805759 ~ 34807631 (-) False LOC110537499
TU1212199 other upstream 950287 34805759 ~ 34807631 (-) False LOC110537499
TU1212200 other upstream 950287 34805759 ~ 34807631 (-) True LOC110537499
TU1212669 other upstream 1364063 35219535 ~ 35260534 (-) True LOC110537509

Expression Profile