RNA id: XM_021623581.2


Basic Information

Item Value
RNA id XM_021623581.2
length 1802
RNA type mRNA
GC content 0.45
exon number 2
gene id LOC110537499
representative False

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 34805721 ~ 34807675 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGAGACAAAAACAAATGTCCCAGAATGCATTTAACAAGAAAATGGCCGATTCAGAATGACGGGTCGCATCTGCTGTGCTAGCTAGGTTGAATTTTCTTTATTTCTGTAATTACATTCCAGCAGCGAAGCCGTTAGTAAATACATTCTGTAGGAATATTACGTGTCACAAACGATGTCCATTTGATGTGTTTGTGAAGTAAACGAAGCACTGTATATTATTTTTTCATTCGcagcagcttttACGTTGGCAATCAAATCAAGTGCAGACATGTCCTCAGTCATCGTAGCAAAACGAGAGGGACCACAGTTCATCAGCGAGGTCGCTGTGAGGGGAAACGCCGCCATGCTGGACTACTGTCGGACGTCTGTGTCGGCTCTGTCCGGGGCAACAGCCGGCATCCTTGGGCTCACAGGACTGTACGGATTTATCTTCTATTTCCTCGCCTCGTTTCTACTCTCCCTTCTTCTAATCCTCAAGGCTAGTCGCAGGTGGAACAAGTGCTTCAAGTCTCGGAGGATGCTCTTCACAGGAGGGCTCGTTGGAGGTCTTTTTACCTACGTCCTGTTCTGGACCTTCCTCTACGGAATGGTGCATGTGTACTAATATAGTTGACCAGAATGATTTTGGTTTTAACCCTAATGTCAGAGAAATTAATATTAACTGCCCACACACTGTTTGTAGATATAGGTGATTGATGAAATATGTTAGATTAACTGTTTATACAGCTATGTGAAGTACaatatatatgcaaaagtatgtggacaccccttcaaattagtgtatttggcaatttcagccacacccgttgctgacaggtatacaactgagcacacagccatggaatctccatagacaaacattagcagtagaatagccttactgaagagctctgtgactttAAATGTAGCTCTGTCATAGGATgcctcctttccaacaagtcagttagtcaaatttctgccctgctagcgctgccccggtcaactgtaagtgctgtttttgtgaagtggaaacgtctaggagcaacaactgctcagctgtgaagtggtaggccacacaaactcacagaacgggaccgtcgAGTGCTGTAACATGTAAAAATCAGGTgccctcagttgcaacactcactacagagttccagaCTGCCTccggaagcaacatcagcacaaacTGTTtgccgggagcttcatgaaatgggtttccatggccgagcagctgcacacaggcatagtgccaactgtaaagtttggtggaggagtaatAATAGTCtgggtttttttgggggggttcgggctaggccccttagttccagtgaagggaaatcttaatgattCTGTGCTttgaactttgtggcaacagtttgggaaaggccctttcctgtttcagcttgaCAATGCCCCCTGTGCACGgtccaaacagaaatggtttgttgagattggtgtggattGAATTTGACTgccctacacagagccctgacctcaaccaaatcaaacacctttgggatgaattggaatgccgactgcaggTCAGATCTAATCACCCGACATCGGTGCCTgaccttactaatgctcttgtggctgaatggaagcaggtccccgcagcaatgttccaacgtctagtggaaagccttcccagaagagtggtggCTGTTATAGACACgaaggggggggaccaactccatattaatgcccatgtttttgaaatgagatgttggacaagcaagtgtccacataaatttggtcatgtagtgtataagtCAGCAACTCTATTTGTATACTAATAAAATATATCTCATGCACTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1212127 lncRNA downstream 46555 34757254 ~ 34759166 (-) True cenpv
TU1212152 lncRNA downstream 203622 34601128 ~ 34602099 (-) True G1064165
TU1212113 lncRNA downstream 224948 34580497 ~ 34580773 (-) True G1064144
TU1212109 lncRNA downstream 229351 34576138 ~ 34576370 (-) True G1064140
TU1212093 lncRNA downstream 232908 34572171 ~ 34572813 (-) True zswim7
TU1212257 lncRNA upstream 6532 34814207 ~ 34814810 (-) True G1064259
TU1212260 lncRNA upstream 9866 34817541 ~ 34818633 (-) True G1064262
TU1212261 lncRNA upstream 11391 34819066 ~ 34819374 (-) True G1064263
TU1212265 lncRNA upstream 14008 34821683 ~ 34821899 (-) True G1064264
TU1212267 lncRNA upstream 15286 34822961 ~ 34823166 (-) True G1064266
XM_021623570.2 mRNA downstream 46376 34757230 ~ 34759345 (-) False cenpv
XM_036937462.1 mRNA downstream 46922 34757230 ~ 34758799 (-) False cenpv
XM_036937459.1 mRNA downstream 47034 34755024 ~ 34758687 (-) False cenpv
XM_036937450.1 mRNA downstream 80191 34602278 ~ 34725530 (-) False ncor1
XM_021623585.2 mRNA upstream 53750 34861425 ~ 34937347 (-) False LOC110537500
XM_021623589.2 mRNA upstream 53750 34861425 ~ 34937348 (-) False LOC110537500
XM_021623586.2 mRNA upstream 53750 34861425 ~ 34948985 (-) False LOC110537500
XM_021623583.2 mRNA upstream 53750 34861425 ~ 34949931 (-) False LOC110537500
XM_021623587.2 mRNA upstream 53750 34861425 ~ 34949931 (-) False LOC110537500
TU1212126 other downstream 46555 34757254 ~ 34759166 (-) False cenpv
TU1210670 other downstream 1098062 33706472 ~ 33707659 (-) True LOC110537478
TU1210388 other downstream 1273080 33517765 ~ 33532641 (-) True med13a
TU1210448 other downstream 1292346 33512925 ~ 33513375 (-) True G1062603
TU1209842 other downstream 1719655 33039485 ~ 33086066 (-) True G1062051
TU1212669 other upstream 411860 35219535 ~ 35260534 (-) True LOC110537509
TU1212981 other upstream 669162 35476837 ~ 35484504 (-) True G1064912
TU1214124 other upstream 984680 35792355 ~ 35810394 (-) True G1065969
TU1214216 other upstream 1131568 35939243 ~ 35939571 (-) True G1066054
TU1214327 other upstream 1291355 36099030 ~ 36099474 (-) True G1066163

Expression Profile