RNA id: XM_021623596.2


Basic Information

Item Value
RNA id XM_021623596.2
length 3736
RNA type mRNA
GC content 0.43
exon number 11
gene id LOC110537504
representative False

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 34979146 ~ 35014273 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAAACAGAAAGCGCTAAAGGCGCTTTTGTTATTCTTTCTCGGATCGATTAGCCGTACAAATAATCAATGAGGAGATTCGATTAATCTGTCTCGGGCGCCCGGGTAGACGTGTTTTGCACTGGTTGAAAGTTCATCGCATTCCCTTCATTTGAGATGGCGCTCCTCCCTCACCATTTTTGCACAGATACGTCACGCGCCATAGACCGGTGCCCCGCGGTTCAGTATGATTGAATCAGCACAGTGTCTATAAAACTGTATACTAAAGCAGGGGTTACGCAAGTACATTTGAGGACCGGCACGCGCCAAACGTGTGCTTGTGGACTGACATAATACAATAGAAGAAGATTTTTAGGCTACAGACGCACTTGGTTTGGGATACGCGTTTTGAAATAACATGGGTAATTGTCATACTGTTGGACCAAATGAGGCCCTTGTTGTCTCAGGTGGTTGCTGTGGCTCCGATGGGAAGACTTATGTGGTGGGAGGCTGGTCATGGGCCTGGTGGCTCATCACAGACATCCAGAGGATGTCTCTGGAGATAATGACCATCCTCTGTCGCTGTGAGAATATCGAAACCTTGGAGGGTGTCCCCCTGGATGTGACAGGGGTGGCTCAGGTGAAGGTGATGGTAGACAATGAGCTGCTGGGCTATGCCTGTGAACAGTTCCTGGGGAAATCTGTGATTGAGATAAAGAGTGTCATTCTGCAGACCCTGGAGGGTCATCTACGCTCTATCCTCGGTACTCTGACGGTAGAGCAGATctaccaggacagagacaggtttGCTGCTCTTGTGCGGGAGGTGGCAGCGCCTGATGTGGGTCGCATGGGCATCGAGATCCTCAGCTTCACCATCAAGGATGTGTATGATAAAGTGGAGTACCTGAGTTCCCTGGGGAAGAGTCAGACGGCCGCAGTACAGAGAGATGCCGATATTGGAGTGgccgaggcagagagagacgcgGGAATCAGGGAAGCAGATTGTAAGAAAGAGATGATGGACGTCAAGTTCCAAGCAGACACCAAGATGGCCGATTCGAAACGAGGGCTGGAGATGCAGAAGGCTGCTTTCAATCAAGAAGTCAACACGAAGAAAGCAGAAGCCCAGCTGGCCTACGAGCTGCAGGCTGCCAAGGAGCAGCAGAAGATCCGTTTGGAGGAGATTGAGATCGAGGTGGTTCAGAGGAAGAAGCAGATCACCATCGAGGAGAAGGAGATTGACCGCACAGAAAAGGAGCTCATCGCCACAGTCAAGAGGCCGGCTGAGGCTGAGGCCTACAAGATGCAGCAGCTGGCCGAGGGACAGAAGATGAAGAAGGTGCTGACTGCCCAGGCAGAGGCAGAGAAGATCCGTCGTATCGGTGAGGCAGAGGCCGGTTCCATAGAGGCTATAGGGAAGGCTGAGGCTGAGAAGATGAGGCTGAAGGCTGAGGCCTACCAGCATTATGGAGATGCTGCAAAGACTGCTCTGGTCCTAGAGGCCCTGCCTAAGATTGCTGCCAAGGTTGCGGCACCCCTGGCCCGGACCAATGAGATCGTCATCCTGAGCGGGGACGGTGGCCGTGTGACCGGCGAGGTGAACCGCCTATTAGCTGAGCTCCCTGTGTCCGTCAACGCACTCACAGGGGTGGACCTGATgaagATCCCTTTGCTTCAGAAGATGATCAACCCTCAAGCATAAAAACAATCTTGTGCACCTTGACTCAGTACATTTCTTTATGCACTCTTTAAATCAACTGCCTTCACCTAGAAACACTTGAAAACaagtatagttttttttttactacaagaGTCTAGATGTTTTCATTTTCCTAAATCCCTGGTGCCTTAGCTCTATAGGGCCAGATCATCTGTATGTACCACTGCTTTTTTGTTAAACATGTTAGTATTTTTTGTAGTTACCCCATTCTGTTGTACTAACacttgtctacattgtagaaaagggACATTCATCATGGTTGTTCTGTGCAGGCCTTATTCTGGTCTTAAAGGTCTCGCCAGGTCTTCACCTTGTGTCTTCATTGTTATTCTTTTGTTCATTGTGTTACAAAATGCTTTGGATGTGCCTGTGGTTTTGTATAGTTATGGAAAGTATTTCAGATATTTCGTCTCAAATGTTACTTTTTTCATTCTAATGTGCAGTCAGTGCCTGGTTACCAACCAAGTGGCTAAACCTCTGGAAAAGTAATGGTTTGGCAATTCTATAGTGTAGTGATACTACAGTAAACCTCCATTTACCATCTCAATGAGAGATGTAGAAATATTGTCCTCCCCATCCTCGTGCCATCTGCCTTGAAAACAGAAACATTGGCATTCTATCTTGTTCTGCAGTAGAATCTTTCATTTCATTCTTCATCTTAGGTATGGGAGAGGTGTGCATTCTTAGGTAGACAACACACAGAAAACATAGACATTAACACATGTGCATGGATCTACAAGTCTGTATGAAGCCATATACTGTCAAAGTTAGCCTTAATATAGAGACCCAGGATTCCTGCTAGCTTTCCTGATCATCTGGATTACCTCAATCAATCTAAGCTTTAATACTTGTTCTTTCCAACTATTGAGACATCATATGGCATGATATGCATTTCAGTCTCTTAGGGTAGCCAATGTTGTGTTATATCATCTTTTGGTTACATTCTGTTAAATTCTTTATAAACTATTATGTAACTTAACTACAGTTTACCTGACTAATTACTTTAACGTTTTTACATGGTGCTTGCTGCCTATGATCTTTTTCTAGGAATGCAATGCTGCCACGACCTGTTGACCATCCAATCATGTATCAGCTTTCTTCACATTCCTTACCCAATGTGCTTCAAACACAAGAATACATTTCAGTTTGTTTTGCCACACATTTGAGTTGGACTGTCTTGTTGTGGAGTTCATTTTATGTTGGCTTCATTTTATGAAAACTTGTTTTAGGGGAAATCTAACCACTTTCTGAATCCGTGACCTCAGCATCATTTTTTCTAATATGTCATTTTTTTACAGTAATGTCAACCTGCTGCCAACTGTGGTATATCTCTGGTATGGGGGAGAAATGTCATTATCTAATCCCTACTGATCACCAAAagaatactgtatttattttattataatcTCAGTTTGTAAGATTTACATAGTAGTAGACTAGACTGTAAAATTTGATTGAtaaacagtgtgatacagtactGTAAATATAGATGGGAACCTGTATTGTGTTTCATGAAATGGCTGATTTGAATTATATAAAGTCAGAACACATCAACATTTCCATCTGGACATACTGATGGCTTTCCCTGGTCAAATTGTGTTTTTGTTCAGCTGAAAAACTCCCGTTGTATGTTCTTTTTTGGCATCTAATTTTTGTGTCAATGCTCTTTCAAAAATGTCTCATGTATTACTATGAATGGATGGTGTAATTTCAGCAAGGTAGAAGCAACTTTCAGATCAGAAAATATACCTTTCGGATCTAGAATGTAGGTGGAAGACCAAACATTGTATGCCTTTTAACTTGTATCTTTATCTATAGAGTATCTGTAATGAAACATGTTTAGATTGATCACCCATTATTGAAATGTATCTATTCAGACTCAAATGTTTGTGTGAATTCGTCCATTTTCTAGACTGTTAAATAATACTGGAAAACTGGTCTAGCATGGATATTTCAGCATGTGAACATCACACTCATATCCTCGACTCTGTGGCAAAGTATTATGTGCTGCCCTATAATAAATGTCTGCCTCATACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1212248 lncRNA downstream 16215 34961601 ~ 34962931 (-) True LOC110537503
TU1212267 lncRNA downstream 155980 34822961 ~ 34823166 (-) True G1064266
TU1212265 lncRNA downstream 157247 34821683 ~ 34821899 (-) True G1064264
TU1212261 lncRNA downstream 159772 34819066 ~ 34819374 (-) True G1064263
TU1212260 lncRNA downstream 160513 34817541 ~ 34818633 (-) True G1064262
TU1212670 lncRNA upstream 55331 35069604 ~ 35069817 (-) True G1064628
TU1212671 lncRNA upstream 55780 35070053 ~ 35070338 (-) True G1064629
TU1212700 lncRNA upstream 93113 35107386 ~ 35107862 (-) True G1064658
TU1212707 lncRNA upstream 100749 35115022 ~ 35115247 (-) True G1064664
TU1212709 lncRNA upstream 104870 35119143 ~ 35119607 (-) True G1064666
XR_002475639.2 mRNA downstream 16187 34961595 ~ 34962959 (-) False LOC110537503
XM_021623584.2 mRNA downstream 23323 34861425 ~ 34955823 (-) False LOC110537500
XM_021623588.2 mRNA downstream 23323 34861425 ~ 34955823 (-) False LOC110537500
XM_036937468.1 mRNA downstream 23323 34861425 ~ 34955823 (-) True LOC110537500
XM_021623591.2 mRNA downstream 23330 34861425 ~ 34955816 (-) False LOC110537500
XM_021623601.2 mRNA upstream 57487 35071760 ~ 35114805 (-) True LOC110537508
XM_021623602.2 mRNA upstream 107899 35122172 ~ 35258937 (-) False LOC110537509
XM_021623603.2 mRNA upstream 382611 35396884 ~ 35401227 (-) True LOC110537510
XM_021623620.2 mRNA upstream 1278434 36292707 ~ 36310874 (-) True LOC110537516
XM_021623621.2 mRNA upstream 1296842 36311115 ~ 36358022 (-) False LOC110537517
TU1212198 other downstream 171515 34805759 ~ 34807631 (-) False LOC110537499
TU1212199 other downstream 171515 34805759 ~ 34807631 (-) False LOC110537499
TU1212200 other downstream 171515 34805759 ~ 34807631 (-) True LOC110537499
TU1212126 other downstream 219980 34757254 ~ 34759166 (-) False cenpv
TU1210670 other downstream 1271487 33706472 ~ 33707659 (-) True LOC110537478
TU1212669 other upstream 205262 35219535 ~ 35260534 (-) True LOC110537509
TU1212981 other upstream 462564 35476837 ~ 35484504 (-) True G1064912
TU1214124 other upstream 778082 35792355 ~ 35810394 (-) True G1065969
TU1214216 other upstream 924970 35939243 ~ 35939571 (-) True G1066054
TU1214327 other upstream 1084757 36099030 ~ 36099474 (-) True G1066163

Expression Profile