RNA id: XM_021623601.2


Basic Information

Item Value
RNA id XM_021623601.2
length 1860
RNA type mRNA
GC content 0.46
exon number 7
gene id LOC110537508
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 35071760 ~ 35114805 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCGCAGGGATTTCGGGTTTCCGCACCGTGCCTTTTCCTGGATGCTGCGAAAACAGGATTAGGGAGGGTTGAACGGTGTAACAGCACGCCCTATATAACACAAGTATCTGTTGTCTATATTGTCACTATTGAACCGACATAGCTAGGTAAACGAAATTTATCGTCCTATTACACCAGTTGTAAAACTAGTCTTTGTAATAGCTAAATAATTCATTGAAATGGAGCGCTGGAAAGGCAGAGTAGCTCTAGTGACTGGAGCTTCGGTCGGGATTGGAGCGGCTGTTGCACGGGCACTTGTCCAACACGGCATGAAGGTTGTCGGATGTGCCAGGAATGTTGACAAGATAGAGAAGCTGGCAGCCGAGTGCCAGAGCGCGGGCTACAGCGGCACGCTGATCCCCTATAAGTGTGACCTGTCCTGTGAGGAGGACATCCTGTCCATGTTCTCTGCCATCAAGACACTGCATCAGGGGGTGGATGTGTGTATCAACAACGCAGGCCTAGCCCACAACGAACCCCTGCTCAGTGGCAAGACTGACGGCTGGAGGAACATGATCGATGTGAATGTCCTGGCCCTGTCAATTTGTACCCGCGAGGCCTACCAGTCAATGAAAGAGCGGAATGTGGACGATGGCCACATCATCAATATTAACAGTATGGGGGGACATAGAATGGTACCTAGTGCAGATGAACACTTCTACTGTGCCACTAAATATGCTGTTACTGCTCTAACGGAGGGGCTACGGCAAGAGCTGCGGGAAGCAAAGACTCACATCAGAGCCACGTGTATATCCCCTGGAATAGTGGAGACTGAGTTTGCCTTCCGGCACCACAACAGTGATCCAGAGAAAGCAGCTGCTGTGTATGAGAGTATAAAATGTTTGAAAGCACAAGACATAGCCAGTGCAGTCACATACGTTCTGGGCACCCCGCCTCACGTCCAGATCGGAGATGTGCAGATGAGGCCGGTGGAACAGGTGTCATAGCAACCGAGCAAGAAGGAATCAGCTGAAGGAGCAGATAGAGCCATGGTGACGACTCCTTAGCGACCCCTGCCGGGCAACGACGAAAATAAACTAGTATTCAACTGGATTTGGAGTGAAGGGATCTGTTTGAGGGGGCGTGGAGGTggctgtgtgtggtgggggggggggggatctctggTGAGGAAAGGGTGGGCAGGTACTCTTAACCACCACTGAATTACTATGAGTGCTGCAACATGGTCTTTGGTGTATTGCTCTGAAGCCACTGCAAACTTAGGAGAGGAGGGTTGTTGCTCCTGTGGTCATATGCCTGCCTGACCATCTTGACAGAGGGAAGAGTATGCCATGAATTGCATTTTTGTTTTTGTAAGTCATAATACATATCTGTTTAAAATGATGGAAGACAACACTGCTATTCAATAAAGAatgataattatatatatatatatatttttttttgtatagGTATTTTAGCTTTGATTATTGGTAGATGTGGCTGATATTCTGTACTCCCTAACCATAGATGCTCAATCCATTTCTACGGTCTTATGTTTTTAATAACAAGCAGATTTGGTTATCCTGGTATTAAGTCTGCTCGTATGTTTTTCAAAACCCATGTTAACCATCACTAATCAGAAAATGTGTATACGGGACATTCAAGCACGATTACGCAACCCCATCACTTTGGAGCAAGTGTATTTCCCCACTCCCATATGATTTTAAATTGTTTTGCACTTTGGATCCATTTGGAGGAGTATAAAGAAAACGCTGTCATCTTGTCTAGAGGAAGTAACTTACTTGTATACTCTCCCCAAGTGTGTACTTGTATGATATAGTAGATGTTTATCAATAAAAATAATTTAGGGATTGTCAAA

Function

GO: NA

KEGG:

id description
K22970 DHRS11; 17beta-estradiol 17-dehydrogenase / 3beta-hydroxysteroid 3-dehydrogenase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1212671 lncRNA downstream 1422 35070053 ~ 35070338 (-) True G1064629
TU1212670 lncRNA downstream 1943 35069604 ~ 35069817 (-) True G1064628
TU1212248 lncRNA downstream 108829 34961601 ~ 34962931 (-) True LOC110537503
TU1212267 lncRNA downstream 248594 34822961 ~ 34823166 (-) True G1064266
TU1212265 lncRNA downstream 249861 34821683 ~ 34821899 (-) True G1064264
TU1212707 lncRNA upstream 217 35115022 ~ 35115247 (-) True G1064664
TU1212709 lncRNA upstream 4338 35119143 ~ 35119607 (-) True G1064666
TU1212710 lncRNA upstream 5576 35120381 ~ 35120653 (-) True G1064667
TU1212838 lncRNA upstream 225076 35339881 ~ 35344998 (-) True G1064788
TU1212865 lncRNA upstream 266639 35381444 ~ 35381648 (-) True G1064815
XM_021623596.2 mRNA downstream 57487 34979146 ~ 35014273 (-) False LOC110537504
XM_021623595.2 mRNA downstream 57488 34979146 ~ 35014272 (-) False LOC110537504
XM_021623598.2 mRNA downstream 58618 34979146 ~ 35013142 (-) False LOC110537504
XM_021623597.2 mRNA downstream 59584 34981201 ~ 35012176 (-) True LOC110537504
XM_036937469.1 mRNA downstream 59585 34979146 ~ 35012175 (-) False LOC110537504
XM_021623602.2 mRNA upstream 7367 35122172 ~ 35258937 (-) False LOC110537509
XM_021623603.2 mRNA upstream 282079 35396884 ~ 35401227 (-) True LOC110537510
XM_021623620.2 mRNA upstream 1177902 36292707 ~ 36310874 (-) True LOC110537516
XM_021623621.2 mRNA upstream 1196310 36311115 ~ 36358022 (-) False LOC110537517
XM_036937475.1 mRNA upstream 1196310 36311115 ~ 36358023 (-) True LOC110537517
TU1212198 other downstream 264129 34805759 ~ 34807631 (-) False LOC110537499
TU1212199 other downstream 264129 34805759 ~ 34807631 (-) False LOC110537499
TU1212200 other downstream 264129 34805759 ~ 34807631 (-) True LOC110537499
TU1212126 other downstream 312594 34757254 ~ 34759166 (-) False cenpv
TU1210670 other downstream 1364101 33706472 ~ 33707659 (-) True LOC110537478
TU1212669 other upstream 104730 35219535 ~ 35260534 (-) True LOC110537509
TU1212981 other upstream 362032 35476837 ~ 35484504 (-) True G1064912
TU1214124 other upstream 677550 35792355 ~ 35810394 (-) True G1065969
TU1214216 other upstream 824438 35939243 ~ 35939571 (-) True G1066054
TU1214327 other upstream 984225 36099030 ~ 36099474 (-) True G1066163

Expression Profile