RNA id: XM_021623603.2


Basic Information

Item Value
RNA id XM_021623603.2
length 2186
RNA type mRNA
GC content 0.46
exon number 4
gene id LOC110537510
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 35396884 ~ 35401227 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tggcggtgtatgCACCTGTCGGTTGGTTGTGATTCGCCAATAAAActtaaagaagaagaagattaTTGCTGGAGAGAGATACAGTGCTGATTGTATGGAGATTGTGACAGCCGGTTAAATGGCATCCCTTGAGAAGTCTAATAGATGGCAGTAATGCAACATTGAATGGCTTCCAACTGCCGTTTAACCTCATCGAAGAAGAAAAGAGCGCAACGACGGATAGACGAGAACATCTTTGGCGCAAGGTTGGTTTCTTCAGATTTTGACCACGCCCACTGCTGAATGCGGAAGTCACCAGTTGCTGCTGTTTGTGTGCATGAAGGTTTTAGAGAACTTTCCCTTGATGTGAACTGAAGATTGTACTGCTCCCCAACATGTCACATACACAAGCACACAGCTACACACTGATTAcaaagtgtgtgtgcatgatcATCACACAACTCTTTGCCTCTGGACATGCAGAAGAAATGACAAAAGATGGAAAACAGAACCGTTCTCTGGTATCCATCCACTACCTTGCCAGTTTACCTACTCTCCGGGATATCATAGTGAAAGAGGGAGCCAGCACTCTGATTGAGTGCAATGTCACTGGAAAGCCAGATTACATTCAGTGGTACAATTCCAAAGGGCACGTTCTGGATGCGGAAGAGGGAGGTGGGAAATGGCTGATTCAGGACAAGGGCGTTTTAAATATCACAACGGTCAGTTTTGAAGACCGAGGCCGATACACCTGCATAGCCTCCAGCTCGGCAGGGACCTCCAACTACACCATCACCTTACGGGTGGCCTACGTCCACAGCGGCCTGGGCCTGTACTACGTCATTGTGTGTCTCATCGCCTTCACCATCACCATGATCCTCAATGTCACGCGCCTCTGCATGGTCAGCAGTCACCTGAAGAAAACGGAGAAGGCCATCAACGAGTTCTTCCGCACCGAGGGAGCTGAGAAGCTCCAGAAGGCCTACGAGATAGCCAAGCGCATCCCCATCATCACCTCAGCCAAGACCATGGAGTGGGCCAAGGTCACCCAGCTCAAGACCATGGAGTTTGCCCGCCACATGGAGGAGCTGGCCCGCAGTGTGCCACTTCCCCAGACCATCCTCAGTTGCAGGGCCTTTGTGGAGGAGGTTATGGAGACGGTGCACACCTCGGTGGGGGCGACAAGCATCCAGAAAGCTATAGAGCCAGCCAACCCAGAGGGGAGAGGTAAAACCTGTGAGGTCCAGATGTCAGCAGAGCAGCAGGGTCCAGCAGCACATGGCAGAGAGGATGATGTTGATGGTACCATTGAAAACAGCCTGGACATTGAGGTGTCTGTACACCCTATGTCCAAGTGTGAGGATGAGAAGTGGGCTGAAGGGGATGAGGTGTCTGTACCCATGCTGGGGCCATGCTCCAGTGGGAGTGTGGCTTATGAAAGTTGCATTTAGTTGTGCGAGTCAGGTCTTTACAACTAATATTTTCCAGTTAGTTGTGAGGTCAAAAGCAAAGGGCTGCTCAGATGGTGGGAGTTGAGAGGTATTCTGTGTTTAGGATGCTACTGCCTCTATTTCATAGAGAAAATACATTGGATGAAACCTAAAGATGTTTCAGAGATGAGATAAGCCCTGATAGCAGTGGTATTGGTATATGGTATTTACTTCACTACTTGCCTCAGTTTAAATGAAGGATTGATTTGGTTGTTTGCTTGTGTGTTTGTAACTTAACACATTAGAAAAAATAAgaaacctgcacactgctcttgctagtatcactgctctttattaagcttGATGTATCAGCCTTcaaaaagctctgacgaaggccttgaggccgagatgtaaagcttaataaagagcagtgatactagtagtGTGCAGGTTTGCAGGTTTCACTAGTATCACTAGTGATACTAGTGATACTAATAGTGTGCAGGATTCTTCCGTGCACCTGCAACAGAGGTGGCTCAGATGTGCCTTTTTGAATTTTGTATCTAAACAAATAACATGTTGTTATTTTTAAAATCACTTGGAATATGGGTTGCACAAGGCAATCTAGCAAATTAAGTACAATTTTACTCGGGGTAATGGGTGTAAtcagtggtataaagtacttaagtaaaaaatacttaagtactacttaattagtttttgggggtatctgtactttactatttatacttTTAAAAAcgtttactttactacatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1212865 lncRNA downstream 15236 35381444 ~ 35381648 (-) True G1064815
TU1212838 lncRNA downstream 51886 35339881 ~ 35344998 (-) True G1064788
TU1212710 lncRNA downstream 276231 35120381 ~ 35120653 (-) True G1064667
TU1212709 lncRNA downstream 277277 35119143 ~ 35119607 (-) True G1064666
TU1212707 lncRNA downstream 281637 35115022 ~ 35115247 (-) True G1064664
TU1212899 lncRNA upstream 4335 35405562 ~ 35405844 (-) True G1064845
TU1212971 lncRNA upstream 6508 35407735 ~ 35408683 (-) True G1064905
TU1212969 lncRNA upstream 16047 35417274 ~ 35418071 (-) True G1064904
TU1212976 lncRNA upstream 25961 35427188 ~ 35427393 (-) True G1064910
TU1213000 lncRNA upstream 66938 35468165 ~ 35468387 (-) True G1064931
XM_021623602.2 mRNA downstream 137947 35122172 ~ 35258937 (-) False LOC110537509
XM_021623601.2 mRNA downstream 282079 35071760 ~ 35114805 (-) True LOC110537508
XM_021623596.2 mRNA downstream 382611 34979146 ~ 35014273 (-) False LOC110537504
XM_021623595.2 mRNA downstream 382612 34979146 ~ 35014272 (-) False LOC110537504
XM_021623598.2 mRNA downstream 383742 34979146 ~ 35013142 (-) False LOC110537504
XM_021623620.2 mRNA upstream 891480 36292707 ~ 36310874 (-) True LOC110537516
XM_021623621.2 mRNA upstream 909888 36311115 ~ 36358022 (-) False LOC110537517
XM_036937475.1 mRNA upstream 909888 36311115 ~ 36358023 (-) True LOC110537517
XM_021623622.2 mRNA upstream 996371 36397598 ~ 36400542 (-) True LOC110537518
XR_002475871.2 mRNA upstream 1011025 36412252 ~ 36413564 (-) False LOC110539141
TU1212669 other downstream 136350 35219535 ~ 35260534 (-) True LOC110537509
TU1212198 other downstream 589253 34805759 ~ 34807631 (-) False LOC110537499
TU1212199 other downstream 589253 34805759 ~ 34807631 (-) False LOC110537499
TU1212200 other downstream 589253 34805759 ~ 34807631 (-) True LOC110537499
TU1212126 other downstream 637718 34757254 ~ 34759166 (-) False cenpv
TU1212981 other upstream 75610 35476837 ~ 35484504 (-) True G1064912
TU1214124 other upstream 391128 35792355 ~ 35810394 (-) True G1065969
TU1214216 other upstream 538016 35939243 ~ 35939571 (-) True G1066054
TU1214327 other upstream 697803 36099030 ~ 36099474 (-) True G1066163
TU1215682 other upstream 1508204 36909431 ~ 36912757 (-) True G1067390

Expression Profile