RNA id: XR_002475871.2


Basic Information

Item Value
RNA id XR_002475871.2
length 899
RNA type mRNA
GC content 0.54
exon number 2
gene id LOC110539141
representative False

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 36412165 ~ 36413564 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctgcaactcccatactgACTCggtagaggtgaaggtcgagagccatgcgtcctccgaaacacgaccccaccaatccgcactgcttcttgacacactgctcgcttgaCCCAGAAGCcacccgcaccaatgtgtcggaggaaacactggtGACCGTGTCCGCGTGCATGTGCCCGGCCAGCCACAAGTAGtctctagagcgcgatgggacaaagaCAGCCAGCCGgacaaaccctcctctaacccggacaacgctgggccaattgtacaccgcctcatgggtctcctgtcacggccggctgtgacccagGGACATCTAGAGGCATGGCATTGCATTAACAAGAATCCCCCTGTCCCATCTGCTCCTGCTACACCCCCTAGTGGACATCCGAAGTCTCATTGACCTGCAGCCATTCCCCcagttctctccctcttcttcgcTCTCTATGTGTGcgattgtgtggttggagacaggtgtgctggagtcaaaGCAGTTCCCCACCACCTGCAGcccgttccataatcaagacctctataaatactcagtcctgccactgccacttccactctgccagatcgtaatcgCCGTTCAGTCAGTCATGCTTCTAGCAATTTGTTGTTATTTAATATCCTGCTGTGCCTATTTCCTTGCGTGACACTGTTTCTCCTCTCGCTGCTGTTTTGCCACTCTGGTTCCTGTCTCCTGCTACACATCTCACTACCCTGTTCTGGactcaccacaccaccactcccttggattcccctccggacctgtttaccctgtcccaacccagctcactccaacctcagcctccaCATCTGGTTTCCTACAACTCATCCAAGCCTCCCTGGATCTGCACTTCAGTTCTCCATGTGTTACAATAAATATattggttcattca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1214489 lncRNA downstream 33069 36378788 ~ 36379183 (-) True G1066315
TU1214430 lncRNA downstream 141941 36270087 ~ 36270311 (-) True G1066257
TU1214426 lncRNA downstream 144850 36267160 ~ 36267402 (-) True G1066254
TU1214425 lncRNA downstream 145943 36265967 ~ 36266309 (-) True G1066253
TU1214420 lncRNA downstream 153778 36258246 ~ 36258474 (-) True G1066248
TU1214506 lncRNA upstream 522 36414086 ~ 36444481 (-) True G1066331
TU1214516 lncRNA upstream 34632 36448196 ~ 36449810 (-) True G1066338
TU1214513 lncRNA upstream 53934 36467498 ~ 36473377 (-) True G1066335
TU1214552 lncRNA upstream 99629 36513193 ~ 36570376 (-) True LOC110537521
TU1214627 lncRNA upstream 202979 36616543 ~ 36741034 (-) True G1066438
XM_021623622.2 mRNA downstream 11710 36397598 ~ 36400542 (-) True LOC110537518
XM_036937475.1 mRNA downstream 54229 36311115 ~ 36358023 (-) True LOC110537517
XM_021623621.2 mRNA downstream 54230 36311115 ~ 36358022 (-) False LOC110537517
XM_021623620.2 mRNA downstream 101378 36292707 ~ 36310874 (-) True LOC110537516
XM_021623603.2 mRNA downstream 1011025 35396884 ~ 35401227 (-) True LOC110537510
XM_036937476.1 mRNA upstream 99629 36513193 ~ 36620615 (-) False LOC110537521
XM_036937477.1 mRNA upstream 99629 36513193 ~ 36620615 (-) False LOC110537521
XM_036937478.1 mRNA upstream 99629 36513193 ~ 36620615 (-) False LOC110537521
XM_036937479.1 mRNA upstream 99629 36513193 ~ 36620615 (-) False LOC110537521
XM_021623627.2 mRNA upstream 216195 36629759 ~ 36641133 (-) True LOC110537522
TU1214327 other downstream 312778 36099030 ~ 36099474 (-) True G1066163
TU1214216 other downstream 472681 35939243 ~ 35939571 (-) True G1066054
TU1214124 other downstream 601858 35792355 ~ 35810394 (-) True G1065969
TU1212981 other downstream 927748 35476837 ~ 35484504 (-) True G1064912
TU1212669 other downstream 1151718 35219535 ~ 35260534 (-) True LOC110537509
TU1215682 other upstream 495867 36909431 ~ 36912757 (-) True G1067390
TU1215723 other upstream 523755 36937319 ~ 36937979 (-) True G1067426
TU1215774 other upstream 606437 37020001 ~ 37030684 (-) True LOC110537534
TU1216092 other upstream 1092316 37505880 ~ 37507144 (-) True LOC110537540
TU1216102 other upstream 1189601 37603165 ~ 37607015 (-) False LOC110537546

Expression Profile