RNA id: XM_036937477.1


Basic Information

Item Value
RNA id XM_036937477.1
length 4320
RNA type mRNA
GC content 0.48
exon number 15
gene id LOC110537521
representative False

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 36513193 ~ 36620615 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGAGACCAGTGAAAAATTCGCACTAGGACCACGCAGCTAGCGAGGCAATAGCGCTGCATTGTCTTTGTTCCTCCACTCAgaatctctccccgtctctctctatcctttcctcTACTTCCATTACAGTATTACACGGGTCTGGATGATTGCAGAGACAGCAACATGGCTGTGAATCTCAGCAAGAACAGACTGGCCCTTCTAACAGCCTACCAGGATGTTATCAACGAGACCTCGTCCACCGACTGGGCCTTGTACACATATGAGGACAACAGCAATGATTTGACACTGGCATCATCAGGAGCTGGAGGTCTACCGGAGATCACAGTGACCTTCGACAATGGCAGGGTCATGTACGGCTTCTGCAGCCTGAAGGAGCCCACGGCCTCACTGCCGCGCTACGTCCTCATCAACTGGGTTGGTGAGGATGTGCCTGATGCAAGGAAGTGTCAGTGTGCCAGCCATGTGGCTAACATTGCAGAGTTTTTCCagGGAGTCAACATCATCGTCAATGCCAGCACCATGGACGACATCGAACCATCCGCCATTGGACAGAGACTGACCAATGGGACGGCTTCGGTGGCCAGCCCCGTCCTCAGCCGTCTGAGaaccagagaggaggagaacggaGAGCTTGGAGTGGGCACCGTGTACACCAAGACCAACGCAGAGATCGAGATGAAGAAGATCAATAGAGAGGAATTCTGGGAACAAGCCAAGCGTGAAGAAGAgctgagaaaggaggaggagcgGAAGAAGGTTGCGGAGGAGAGGCAACGCTTTGAGGAGGAAAGAATGGAGCTGGAAAGGAAGGAgcaagaggatagagagaagaggtaCCGCGAAAGGGAGAGGCAAATTGAGGAACACAGaaAGAAGAtgcaagaggaagaggaggccaaAGAGAGGACACGGAACCAGCCCCTCATAACAGCAGAACCTAGCTATGAGGATCTGGAGAAAGAGAACAAGGAGACGGAAGTGGAGGAGGCGAAAGCCCTGATTGCCCAGCGGGCGGACAATCCCAGGGAGTTCTTTAAGCAGAAAGAGAAGGCTGTGACCACTGGTGTGGacgtctctcctgtctctatccACAGGGCCGGCCGTTTGGACAGCCCGTTACCAGGCCGTTTGGACAGCCCGTTCTTGAAGCAGCAGCACAGTCCCAGCGAGCCCAGTCCGCCCCCCCTCTGCACCCCGCCACATGCGAGGCTGCAGCCCACTGCACCCGATGGTGATGATGAAGGGAGCTCAGACCACAGCATGGGGACGTCCCCAACACCTATCCCTAAAATAGTCACCACACCCATCCAGGAGGCAGAGGACGACAGCCGGAACGAGTGGGgtGAGCCGAAGCAGCAGCCAGGCCCAGTCCAGGAGTCCACTCCCACCAAGCCCGTTCAGAGCGTGGCCCCCCAGACCCGCCCAGACTCCCAAGCCCCGTCCTCAACCTCGGACGACTACGACCCCTTCTCAGGTTTCAGGCCCCTTCCCGCACCCACTGCCGCAGACCCCCTGGTGGACCTATGGGACAGCAGTCCTGCCACAGGCTCCGCCCCCTCTCAGGCCCTGCCTCCTGGAGGGCGAGTCCAGCCCCTGCTGAGCTTCGACGAGATGGGGGACGTACCATTCTACCCGGGGGGCCCCGGGGGTGCTGAGGACGAGCCCTCCAGCCTGGTGGACGTGGCTGGGACCCACGATATGACCCTGAGCTACCAGCATGCACTGCAACATGCTTCAGATGACACTCAGCTGATGACCAATGGGGAGACGCTCCTCAAAGAAGGGACTCAGGCGAGCGAGGGTTACTTCAGCCAAtcgcaggaggaggaggactgcTCTGCTAAAACGAACCCGACGCCAGTGTTTTATAACAAGCCACCAGAGATTGACATCACGTGCTGGGACACGGACCCTGTAATGGAGGACAGCGACTAGACGATGGCGGAGGAGAACAGTCCGGTGGAGGGAAGTAGAAACAACGCATCATCAATGAcggaactgtttttttttttaaagtaataatTACAAGtcttgcatttaaaaaaaaaaatctgtataatgttctagaataaaacaaaaaaatgttagCCACCGAAAAGGTTGTCGAGTTATTGTTAGAGAtgctaattggttgatgatgagctcttgttttttaaaatgtatttcttatATTTCTCCTTATTTGCTATGTAGAGTAAATAGCAGAGAGTGATAACTACTTTCTTGCGTACTTATATACACAGCTCAGTAGCTCATGTCTGTGTCTTCTACAGCAGATATGACCCCTGTACCAGACAGGTAGCCTATTAAAAGTTAAAGCAAACCCTTTTGTGACCAATCACAATTATTCCTACCAcagccccctcctcctctctcccccaaccCTGGGCCCCACCTTCCACCCTCCCTAGTGCCAAGAGTTCCCCTGCTCTGGCCCTCTCCCCTGAGGCCTAGGGGAcctaacctcacacacacacacacaccccccccccccccattctgggTAGCTGGTTGGGGATAAAAGTGGGCACGGTGCCTGGGGGAAGGGCGAGGGGGATCAGAGAGGGAATGGTGCCAAGTGTAATCCTGAATTTTTCAATGTGTCAGTTTGGCCATGGGACCTTACTCGTAATCCACTGTAGACAGATAGAGGAGGAGCGGGGAACCAGACAAAGGCATGGCGGACATCATAGTACAGGCTGGGATAGCAGTGCTACTGTACTATATCATAGTAAAaccctaaaatatatatatatgtgcaaGTCACTTTGAAAAGGAATATCTATCGTAGTTTCTTATTGTTTATTGTTGGCATATACACATTTTCCCCTAGTCTGTTTTTCTGCTGGGAAGGTATTAGTGCTATCCCAGCATAAAATCAGACTAGAGGAAAATGTGTATATTTTTTACTACCTATTAAAAGTGTACTAGAAATTAATATTCAGGATCTTTGAATCATGGCCATAGCTGTAGTCTCGTTTTGTTTCGTCTCCAGTGAAAACTAGGCAATAACTATATCTAGAGTACTCAGATGGGAACGAGGACATTCGTCACACGTTGTGGCACTATGAACGGAACAGTGTGTCTTGTGCTAAGGTTGTTGGAGAGCTGCCACACTAGTCTCTGCTGTATGACATGATACCCTCCTTTTCAGTAGACACAAATTCACAATTTTTTGCATTCCATCTGTTTAAATTTCCCTCGTCCTTCTTATAAAATGATGTAGTTCACATGCACGCCCCCTTGATGGCCTCAGAGGCACTATTGTAATTCTACCATTGGGACTATGTTGTTTTCGCACAGGTCTCATTCCCTGCTTGACTTTCACCCAGTCATCTCAGTTCTGATTTCACCCCTACAGTCTAAATGAgaaacagtacagtagactagctTTGCACGTAGGCCTTAGAAATGATTTTGATCATCAAGACTCATTATCCCCTTTATTAATGTTCCAATGTTTAGAACAGAtgattattgacccccccccccctccccccacacacacacggcttgtagactgtctgtctcagtcttccTTCATATGATCTAGAGGTTGTTTATTATTGTTACTGTTCAAGGGTAGTTTCATTTCTGAGATTCCACACCTCTGATCTGATTCTAAATAAATCCTGTCATTCTTATTCATAGAGATAGAACAGTTCTATATTGTTATATCTCTCTGTTCTTACCACAGAGTTCTGAGTGGGAACCAGCAAGCaataagaaagaaaaaaagaacaatgttgtttttttgtcttgtAAATAATGTTTGATATTTAGTAATATACAACTAATGATCGACTAACACTTGTTTTTTTGGTCATTGTGGCCCTTATGACACTTTGAATTGAGGCTTGTTGTGGGATTGAGTGAGATTTTTACATGAAGTTTCTTTGAAGAGAGATTTGAGTCGTGGTGGGATTCCATATCCCTCGCAGCCTTTTCTGTATATGAGAATCACCTAATGCTTGGTAAGAGCCGACCAACCTGCATCTTTAGCAGTAACTGACACCGTTTCCACCTAATTTCAATGTATACTTCTTCACTCTGATAAcctcctggttagtgattattatTCTCTCCCTATTGCACTACTAGGagactactactctactactacccCTAATACTCGCCCCCAAAGCAAGGCTTAGCTGTTCCTTGGCTTTACTGATCTTTTTATTTAAAAGATAGAAATAAAAAGATTCTCTTCCCTCTTTTGCGTCCGCTTCtcacacacttttttttaaataagcgcAAGATCTTTTGTGACATGCTAGGTGCTGATGTATGTTAATAAAAGACTTAAAAACCTCCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1214513 lncRNA downstream 39816 36467498 ~ 36473377 (-) True G1066335
TU1214516 lncRNA downstream 63383 36448196 ~ 36449810 (-) True G1066338
TU1214506 lncRNA downstream 68712 36414086 ~ 36444481 (-) True G1066331
TU1214504 lncRNA downstream 99635 36412165 ~ 36413558 (-) True LOC110539141
TU1214489 lncRNA downstream 134010 36378788 ~ 36379183 (-) True G1066315
TU1214677 lncRNA upstream 86833 36707448 ~ 36708880 (-) False LOC110537525
TU1214682 lncRNA upstream 86833 36707448 ~ 36708693 (-) False LOC110537525
TU1214674 lncRNA upstream 86911 36707526 ~ 36708880 (-) False LOC110537525
TU1214675 lncRNA upstream 86911 36707526 ~ 36708693 (-) False LOC110537525
TU1214678 lncRNA upstream 86911 36707526 ~ 36709032 (-) False LOC110537525
XR_002475871.2 mRNA downstream 99629 36412252 ~ 36413564 (-) False LOC110539141
XM_021623622.2 mRNA downstream 112651 36397598 ~ 36400542 (-) True LOC110537518
XM_036937475.1 mRNA downstream 155170 36311115 ~ 36358023 (-) True LOC110537517
XM_021623621.2 mRNA downstream 155171 36311115 ~ 36358022 (-) False LOC110537517
XM_021623620.2 mRNA downstream 202319 36292707 ~ 36310874 (-) True LOC110537516
XM_021623627.2 mRNA upstream 9144 36629759 ~ 36641133 (-) True LOC110537522
XM_021623628.2 mRNA upstream 24454 36645069 ~ 36654649 (-) True LOC110537523
XM_021623629.2 mRNA upstream 49889 36670504 ~ 36700566 (-) False LOC110537524
XM_021623630.2 mRNA upstream 49889 36670504 ~ 36700571 (-) False LOC110537524
XR_002475643.2 mRNA upstream 50831 36671446 ~ 36700574 (-) True LOC110537524
TU1214327 other downstream 413719 36099030 ~ 36099474 (-) True G1066163
TU1214216 other downstream 573622 35939243 ~ 35939571 (-) True G1066054
TU1214124 other downstream 702799 35792355 ~ 35810394 (-) True G1065969
TU1212981 other downstream 1028689 35476837 ~ 35484504 (-) True G1064912
TU1212669 other downstream 1252659 35219535 ~ 35260534 (-) True LOC110537509
TU1215682 other upstream 288816 36909431 ~ 36912757 (-) True G1067390
TU1215723 other upstream 316704 36937319 ~ 36937979 (-) True G1067426
TU1215774 other upstream 399386 37020001 ~ 37030684 (-) True LOC110537534
TU1216092 other upstream 885265 37505880 ~ 37507144 (-) True LOC110537540
TU1216102 other upstream 982550 37603165 ~ 37607015 (-) False LOC110537546

Expression Profile